Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SORL1-212ENST00000534286 3501 ntTSL 2 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 OR5D18-201ENST00000333976 991 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 RN7SKP148-201ENST00000410179 275 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 RNU6-233P-201ENST00000410845 141 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 BOLL-204ENST00000430004 2987 ntTSL 2 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC006978.2-201ENST00000442800 666 ntAPPRIS P1 TSL 3 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 HSPE1P10-201ENST00000508631 558 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC027801.3-201ENST00000515049 698 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
HLA-DOAP06340 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC026458.1-201ENST00000564330 438 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 ARGFXP2-201ENST00000579304 949 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC010976.1-205ENST00000596439 1007 ntTSL 5 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC137695.2-201ENST00000603123 754 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 IGKV2OR2-7-201ENST00000604652 304 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC8.43□□□□□ -1.06
HLA-DOAP06340 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
HLA-DOAP06340 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC8.43□□□□□ -1.06
HLA-DOAP06340 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
HLA-DOAP06340 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
HLA-DOAP06340 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
HLA-DOAP06340 OGFOD1P1-201ENST00000447552 1592 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 AC090983.1-201ENST00000623426 3897 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 AL359263.1-201ENST00000441188 2796 ntBASIC8.43□□□□□ -1.06
HLA-DOAP06340 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
HLA-DOAP06340 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
HLA-DOAP06340 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 NPIPB6-201ENST00000532254 2016 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 AMMECR1-IT1-201ENST00000418848 561 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 AL022324.2-201ENST00000434827 780 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC245047.5-201ENST00000437312 556 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 UBQLN1P1-207ENST00000441056 1169 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC063955.1-201ENST00000462872 685 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 RN7SL88P-201ENST00000480166 299 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC066616.1-201ENST00000486795 413 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 TRIM36-IT1-201ENST00000503723 881 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 SCARNA6-201ENST00000515982 265 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 RAB30-209ENST00000532548 644 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC079362.1-202ENST00000547089 278 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 ULK4P2-202ENST00000564187 492 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC005479.3-201ENST00000602790 431 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 AL136370.1-201ENST00000608166 691 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 PRSS3P3-201ENST00000612253 692 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC073263.3-201ENST00000624449 858 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 XRCC6P5-201ENST00000435236 1795 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 KCNJ15-205ENST00000398930 2914 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 OSBPL9-202ENST00000371714 3352 ntAPPRIS ALT1 TSL 2 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 AC009108.3-201ENST00000602739 3515 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC8.42□□□□□ -1.06
HLA-DOAP06340 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
HLA-DOAP06340 UG0898H09-202ENST00000623646 7040 ntBASIC8.42□□□□□ -1.06
HLA-DOAP06340 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC8.41□□□□□ -1.06
HLA-DOAP06340 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-DOAP06340 RETREG1-202ENST00000399793 3145 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
HLA-DOAP06340 NACA-216ENST00000550952 2922 ntTSL 2 BASIC8.41□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms