RNA–Protein interactions for RNA: ENST00000502773.5

PDGFC-203, Transcript of platelet derived growth factor C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFC, Length 4,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-203ENST00000502773 NISCHQ9Y2I1 1504 aa15.33■□□□□ 0.05
PDGFC-203ENST00000502773 CCDC180Q9P1Z9 1646 aa13.27□□□□□ -0.29
PDGFC-203ENST00000502773 ZCCHC6Q5VYS8 1495 aaKnown RBP12.91□□□□□ -0.34
PDGFC-203ENST00000502773 DCAF1Q9Y4B6 1507 aa12.79□□□□□ -0.36
PDGFC-203ENST00000502773 DCAF8L2P0C7V8 631 aa12.76□□□□□ -0.37
PDGFC-203ENST00000502773 SHROOM4Q9ULL8 1493 aa12.65□□□□□ -0.38
PDGFC-203ENST00000502773 MYO15BQ96JP2 1530 aa12.57□□□□□ -0.4
PDGFC-203ENST00000502773 SUPT5HO00267 1087 aaKnown RBP12.5□□□□□ -0.41
PDGFC-203ENST00000502773 NACADO15069 1562 aa12.38□□□□□ -0.43
PDGFC-203ENST00000502773 RB1CC1Q8TDY2 1594 aa12.2□□□□□ -0.46
PDGFC-203ENST00000502773 ABCC9O60706 1549 aa12.18□□□□□ -0.46
PDGFC-203ENST00000502773 SCRIBQ14160 1630 aa12.11□□□□□ -0.47
PDGFC-203ENST00000502773 CHIC1Q5VXU3 224 aa12.08□□□□□ -0.47
PDGFC-203ENST00000502773 RSF1Q96T23 1441 aaPredicted RBP11.99□□□□□ -0.49
PDGFC-203ENST00000502773 BAZ1AQ9NRL2 1556 aaPredicted RBP11.92□□□□□ -0.5
PDGFC-203ENST00000502773 TRIM41Q8WV44 630 aa11.89□□□□□ -0.51
PDGFC-203ENST00000502773 PELP1Q8IZL8 1130 aaKnown RBP11.88□□□□□ -0.51
PDGFC-203ENST00000502773 MYT1Q01538 1121 aa11.75□□□□□ -0.53
PDGFC-203ENST00000502773 MROH2BQ7Z745 1585 aa11.73□□□□□ -0.53
PDGFC-203ENST00000502773 CECR2Q9BXF3 1484 aa11.72□□□□□ -0.53
PDGFC-203ENST00000502773 TOP2AP11388 1531 aaKnown RBP11.69□□□□□ -0.54
PDGFC-203ENST00000502773 SMARCA4P51532 1647 aa11.67□□□□□ -0.54
PDGFC-203ENST00000502773 EEA1Q15075 1411 aa11.63□□□□□ -0.55
PDGFC-203ENST00000502773 SMARCA2P51531 1590 aa11.61□□□□□ -0.55
PDGFC-203ENST00000502773 WIZO95785 1651 aa11.6□□□□□ -0.55
PDGFC-203ENST00000502773 TRIM26Q12899 539 aaPredicted RBP11.6□□□□□ -0.55
PDGFC-203ENST00000502773 ZEB1P37275 1124 aaPredicted RBP11.59□□□□□ -0.55
PDGFC-203ENST00000502773 PABPN1Q86U42 306 aaKnown RBP eCLIP11.56□□□□□ -0.56
PDGFC-203ENST00000502773 PEG3Q9GZU2 1588 aa11.54□□□□□ -0.56
PDGFC-203ENST00000502773 LOC105371045A0A1W2PR82 267 aa11.52□□□□□ -0.57
PDGFC-203ENST00000502773 CCDC88BA6NC98 1476 aa11.52□□□□□ -0.57
PDGFC-203ENST00000502773 UNC13AQ9UPW8 1703 aa11.52□□□□□ -0.57
PDGFC-203ENST00000502773 BAZ1BQ9UIG0 1483 aaKnown RBP11.51□□□□□ -0.57
PDGFC-203ENST00000502773 PCGF6Q9BYE7 350 aa11.5□□□□□ -0.57
PDGFC-203ENST00000502773 FAM9AQ8IZU1 332 aaPredicted RBP11.5□□□□□ -0.57
PDGFC-203ENST00000502773 BICRAQ9NZM4 1560 aa11.49□□□□□ -0.57
PDGFC-203ENST00000502773 HRCP23327 699 aa11.48□□□□□ -0.57
PDGFC-203ENST00000502773 ATAD2BQ9ULI0 1458 aa11.46□□□□□ -0.58
PDGFC-203ENST00000502773 AEBP2Q6ZN18 517 aaPredicted RBP11.44□□□□□ -0.58
PDGFC-203ENST00000502773 CSRNP3Q8WYN3 585 aa11.42□□□□□ -0.58
PDGFC-203ENST00000502773 WRNQ14191 1432 aaPredicted RBP eCLIP11.41□□□□□ -0.58
PDGFC-203ENST00000502773 NCAPD3P42695 1498 aa11.38□□□□□ -0.59
PDGFC-203ENST00000502773 APLP2Q06481 763 aa11.38□□□□□ -0.59
PDGFC-203ENST00000502773 HMGXB3Q12766 1538 aa11.37□□□□□ -0.59
PDGFC-203ENST00000502773 UBTFP17480 764 aaKnown RBP11.37□□□□□ -0.59
PDGFC-203ENST00000502773 TNIKQ9UKE5 1360 aa11.36□□□□□ -0.59
PDGFC-203ENST00000502773 EIF4G1Q04637 1599 aaKnown RBP11.34□□□□□ -0.59
PDGFC-203ENST00000502773 GOLGA3Q08378 1498 aa11.34□□□□□ -0.59
PDGFC-203ENST00000502773 CEP164Q9UPV0 1460 aa11.32□□□□□ -0.6
PDGFC-203ENST00000502773 ABCC8Q09428 1581 aa11.24□□□□□ -0.61
PDGFC-203ENST00000502773 CEP162Q5TB80 1403 aa11.22□□□□□ -0.61
PDGFC-203ENST00000502773 EHMT2Q96KQ7 1210 aa11.21□□□□□ -0.62
PDGFC-203ENST00000502773 KIF27Q86VH2 1401 aa11.2□□□□□ -0.62
PDGFC-203ENST00000502773 KIF21BO75037 1637 aa11.19□□□□□ -0.62
PDGFC-203ENST00000502773 SOGA1O94964 1423 aa11.17□□□□□ -0.62
PDGFC-203ENST00000502773 CFTRP13569 1480 aa11.17□□□□□ -0.62
PDGFC-203ENST00000502773 TOP2BQ02880 1626 aa11.17□□□□□ -0.62
PDGFC-203ENST00000502773 CADPSQ9ULU8 1353 aa11.15□□□□□ -0.62
PDGFC-203ENST00000502773 CLIP1P30622 1438 aa11.14□□□□□ -0.63
PDGFC-203ENST00000502773 ERICH3Q5RHP9 1530 aa11.12□□□□□ -0.63
PDGFC-203ENST00000502773 CCER1Q8TC90 406 aaPredicted RBP11.12□□□□□ -0.63
PDGFC-203ENST00000502773 BIVM-ERCC5R4GMW8 1640 aa11.11□□□□□ -0.63
PDGFC-203ENST00000502773 SYNJ1O43426 1573 aa11.09□□□□□ -0.63
PDGFC-203ENST00000502773 VPS8Q8N3P4 1428 aa11.07□□□□□ -0.64
PDGFC-203ENST00000502773 PRDM2Q13029 1718 aa11.02□□□□□ -0.64
PDGFC-203ENST00000502773 PDS5BQ9NTI5 1447 aa11.01□□□□□ -0.65
PDGFC-203ENST00000502773 PRXQ9BXM0 1461 aa11.01□□□□□ -0.65
PDGFC-203ENST00000502773 CC2D2AQ9P2K1 1620 aa10.99□□□□□ -0.65
PDGFC-203ENST00000502773 RUSC2Q8N2Y8 1516 aa10.99□□□□□ -0.65
PDGFC-203ENST00000502773 CUX1P39880 1505 aa10.97□□□□□ -0.65
PDGFC-203ENST00000502773 CUX2O14529 1486 aa10.97□□□□□ -0.65
PDGFC-203ENST00000502773 FANCD2Q9BXW9 1451 aa10.97□□□□□ -0.65
PDGFC-203ENST00000502773 RAPGEF2Q9Y4G8 1499 aa10.97□□□□□ -0.65
PDGFC-203ENST00000502773 CLSPNQ9HAW4 1339 aa10.96□□□□□ -0.65
PDGFC-203ENST00000502773 FHAD1B1AJZ9 1412 aa10.96□□□□□ -0.65
PDGFC-203ENST00000502773 CARMIL1Q5VZK9 1371 aa10.96□□□□□ -0.66
PDGFC-203ENST00000502773 TTBK1Q5TCY1 1321 aaPredicted RBP10.96□□□□□ -0.66
PDGFC-203ENST00000502773 LAMC3Q9Y6N6 1575 aa10.95□□□□□ -0.66
PDGFC-203ENST00000502773 PPARGC1BQ86YN6 1023 aaKnown RBP10.93□□□□□ -0.66
PDGFC-203ENST00000502773 ACIN1Q9UKV3 1341 aaKnown RBP10.92□□□□□ -0.66
PDGFC-203ENST00000502773 DNMBPQ6XZF7 1577 aa10.92□□□□□ -0.66
PDGFC-203ENST00000502773 FGD5Q6ZNL6 1462 aa10.9□□□□□ -0.66
PDGFC-203ENST00000502773 IGF1RP08069 1367 aa10.9□□□□□ -0.67
PDGFC-203ENST00000502773 RANGAP1P46060 587 aaPredicted RBP10.88□□□□□ -0.67
PDGFC-203ENST00000502773 MAP3K1Q13233 1512 aa10.87□□□□□ -0.67
PDGFC-203ENST00000502773 ABCA10Q8WWZ4 1543 aa10.87□□□□□ -0.67
PDGFC-203ENST00000502773 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.86□□□□□ -0.67
PDGFC-203ENST00000502773 ERICH6Q7L0X2 663 aa10.86□□□□□ -0.67
PDGFC-203ENST00000502773 CUL7Q14999 1698 aa10.84□□□□□ -0.67
PDGFC-203ENST00000502773 EFCAB5A4FU69 1503 aa10.84□□□□□ -0.67
PDGFC-203ENST00000502773 TOPBP1Q92547 1522 aa10.83□□□□□ -0.68
PDGFC-203ENST00000502773 FMN1Q68DA7 1419 aa10.83□□□□□ -0.68
PDGFC-203ENST00000502773 HNRNPUL2Q1KMD3 747 aaKnown RBP10.83□□□□□ -0.68
PDGFC-203ENST00000502773 CENPBP07199 599 aaPredicted RBP10.83□□□□□ -0.68
PDGFC-203ENST00000502773 POLA1P09884 1462 aaPredicted RBP10.78□□□□□ -0.68
PDGFC-203ENST00000502773 ARAP1Q96P48 1450 aa10.78□□□□□ -0.68
PDGFC-203ENST00000502773 CCNB3Q8WWL7 1395 aa10.78□□□□□ -0.68
PDGFC-203ENST00000502773 AQRO60306 1485 aaKnown RBP eCLIP10.77□□□□□ -0.68
PDGFC-203ENST00000502773 ZNF316A6NFI3 1004 aaPredicted RBP10.77□□□□□ -0.69
PDGFC-203ENST00000502773 ATP1B4Q9UN42 357 aaPredicted RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms