RNA–Protein interactions for RNA: ENST00000399793.6

RETREG1-202, Transcript of reticulophagy regulator 1, humanhuman

TSL 1 (best) BASIC

Gene RETREG1, Length 3,145 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG1-202ENST00000399793 PELP1Q8IZL8 1130 aaKnown RBP15.17■□□□□ 0.02
RETREG1-202ENST00000399793 HRCP23327 699 aa14.95□□□□□ -0.02
RETREG1-202ENST00000399793 NISCHQ9Y2I1 1504 aa14.9□□□□□ -0.02
RETREG1-202ENST00000399793 MYT1Q01538 1121 aa14.73□□□□□ -0.05
RETREG1-202ENST00000399793 PPARGC1BQ86YN6 1023 aaKnown RBP14.64□□□□□ -0.07
RETREG1-202ENST00000399793 SCAF1Q9H7N4 1312 aaKnown RBP14.44□□□□□ -0.1
RETREG1-202ENST00000399793 PCGF6Q9BYE7 350 aa14.39□□□□□ -0.11
RETREG1-202ENST00000399793 MYO15BQ96JP2 1530 aa14.09□□□□□ -0.15
RETREG1-202ENST00000399793 TTBK1Q5TCY1 1321 aaPredicted RBP13.97□□□□□ -0.17
RETREG1-202ENST00000399793 ACIN1Q9UKV3 1341 aaKnown RBP13.92□□□□□ -0.18
RETREG1-202ENST00000399793 NEUROD1Q13562 356 aa13.86□□□□□ -0.19
RETREG1-202ENST00000399793 GTF3C3Q9Y5Q9 886 aa13.84□□□□□ -0.19
RETREG1-202ENST00000399793 ZEB1P37275 1124 aaPredicted RBP13.84□□□□□ -0.19
RETREG1-202ENST00000399793 DCAF1Q9Y4B6 1507 aa13.83□□□□□ -0.2
RETREG1-202ENST00000399793 SUPT5HO00267 1087 aaKnown RBP13.82□□□□□ -0.2
RETREG1-202ENST00000399793 TRIM26Q12899 539 aaPredicted RBP13.78□□□□□ -0.2
RETREG1-202ENST00000399793 CHIC1Q5VXU3 224 aa13.78□□□□□ -0.2
RETREG1-202ENST00000399793 CCDC180Q9P1Z9 1646 aa13.76□□□□□ -0.21
RETREG1-202ENST00000399793 BCL11AQ9H165 835 aa13.75□□□□□ -0.21
RETREG1-202ENST00000399793 CENPBP07199 599 aaPredicted RBP13.67□□□□□ -0.22
RETREG1-202ENST00000399793 SHROOM4Q9ULL8 1493 aa13.66□□□□□ -0.22
RETREG1-202ENST00000399793 FAM9AQ8IZU1 332 aaPredicted RBP13.64□□□□□ -0.23
RETREG1-202ENST00000399793 PRKCSHP14314 528 aaPredicted RBP13.59□□□□□ -0.23
RETREG1-202ENST00000399793 LOC105371045A0A1W2PR82 267 aa13.53□□□□□ -0.24
RETREG1-202ENST00000399793 ANP32EQ9BTT0 268 aa13.41□□□□□ -0.26
RETREG1-202ENST00000399793 DIEXFQ68CQ4 756 aaKnown RBP13.4□□□□□ -0.26
RETREG1-202ENST00000399793 CSRNP3Q8WYN3 585 aa13.29□□□□□ -0.28
RETREG1-202ENST00000399793 ERICH6Q7L0X2 663 aa13.25□□□□□ -0.29
RETREG1-202ENST00000399793 YTHDC1Q96MU7 727 aaKnown RBP13.25□□□□□ -0.29
RETREG1-202ENST00000399793 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.16□□□□□ -0.3
RETREG1-202ENST00000399793 CCER1Q8TC90 406 aaPredicted RBP13.14□□□□□ -0.31
RETREG1-202ENST00000399793 APLP2Q06481 763 aa13.14□□□□□ -0.31
RETREG1-202ENST00000399793 TRIM41Q8WV44 630 aa13.13□□□□□ -0.31
RETREG1-202ENST00000399793 TSHZ2Q9NRE2 1034 aa13.13□□□□□ -0.31
RETREG1-202ENST00000399793 SUPT16HQ9Y5B9 1047 aaKnown RBP13.04□□□□□ -0.32
RETREG1-202ENST00000399793 MIER1Q8N108 512 aa13.02□□□□□ -0.33
RETREG1-202ENST00000399793 ZNF316A6NFI3 1004 aaPredicted RBP13.02□□□□□ -0.33
RETREG1-202ENST00000399793 CLSPNQ9HAW4 1339 aa12.96□□□□□ -0.33
RETREG1-202ENST00000399793 ANO8Q9HCE9 1232 aaPredicted RBP12.85□□□□□ -0.35
RETREG1-202ENST00000399793 RBM19Q9Y4C8 960 aaKnown RBP12.77□□□□□ -0.37
RETREG1-202ENST00000399793 EHMT2Q96KQ7 1210 aa12.77□□□□□ -0.37
RETREG1-202ENST00000399793 ZCCHC6Q5VYS8 1495 aaKnown RBP12.76□□□□□ -0.37
RETREG1-202ENST00000399793 MSH5O43196 834 aa12.73□□□□□ -0.37
RETREG1-202ENST00000399793 BCANQ96GW7 911 aa12.69□□□□□ -0.38
RETREG1-202ENST00000399793 SALL2Q9Y467 1007 aaPredicted RBP12.65□□□□□ -0.38
RETREG1-202ENST00000399793 DEKP35659 375 aaKnown RBP12.64□□□□□ -0.39
RETREG1-202ENST00000399793 UBE2Q2Q8WVN8 375 aa12.62□□□□□ -0.39
RETREG1-202ENST00000399793 MYT1LQ9UL68 1186 aa12.61□□□□□ -0.39
RETREG1-202ENST00000399793 FKBP8Q14318 412 aa12.59□□□□□ -0.39
RETREG1-202ENST00000399793 CCDC136Q96JN2 1154 aa12.59□□□□□ -0.39
RETREG1-202ENST00000399793 ERICH6BQ5W0A0 696 aa12.54□□□□□ -0.4
RETREG1-202ENST00000399793 FANCIQ9NVI1 1328 aa12.54□□□□□ -0.4
RETREG1-202ENST00000399793 ITGAEP38570 1179 aa12.5□□□□□ -0.41
RETREG1-202ENST00000399793 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.44□□□□□ -0.42
RETREG1-202ENST00000399793 NEFLP07196 543 aa12.43□□□□□ -0.42
RETREG1-202ENST00000399793 KCNH8Q96L42 1107 aa12.42□□□□□ -0.42
RETREG1-202ENST00000399793 DCAF8L2P0C7V8 631 aa12.41□□□□□ -0.42
RETREG1-202ENST00000399793 WRNQ14191 1432 aaPredicted RBP eCLIP12.4□□□□□ -0.42
RETREG1-202ENST00000399793 EIF5BO60841 1220 aaKnown RBP12.38□□□□□ -0.43
RETREG1-202ENST00000399793 IL27Q8NEV9 243 aa12.38□□□□□ -0.43
RETREG1-202ENST00000399793 RTN4Q9NQC3 1192 aaKnown RBP12.36□□□□□ -0.43
RETREG1-202ENST00000399793 NBR1Q14596 966 aa12.35□□□□□ -0.43
RETREG1-202ENST00000399793 HNRNPUL2Q1KMD3 747 aaKnown RBP12.35□□□□□ -0.43
RETREG1-202ENST00000399793 CDK11AQ9UQ88 783 aaPredicted RBP12.33□□□□□ -0.44
RETREG1-202ENST00000399793 PKNOX2Q96KN3 472 aa12.31□□□□□ -0.44
RETREG1-202ENST00000399793 RB1CC1Q8TDY2 1594 aa12.26□□□□□ -0.45
RETREG1-202ENST00000399793 NOP58Q9Y2X3 529 aaKnown RBP12.26□□□□□ -0.45
RETREG1-202ENST00000399793 CEP162Q5TB80 1403 aa12.24□□□□□ -0.45
RETREG1-202ENST00000399793 PAK3O75914 559 aaPredicted RBP12.23□□□□□ -0.45
RETREG1-202ENST00000399793 ABCC9O60706 1549 aa12.23□□□□□ -0.45
RETREG1-202ENST00000399793 SLC24A1O60721 1099 aa12.21□□□□□ -0.45
RETREG1-202ENST00000399793 RSF1Q96T23 1441 aaPredicted RBP12.21□□□□□ -0.46
RETREG1-202ENST00000399793 RTL5Q5HYW3 569 aaPredicted RBP12.2□□□□□ -0.46
RETREG1-202ENST00000399793 TRIM52Q96A61 297 aa12.2□□□□□ -0.46
RETREG1-202ENST00000399793 PLEKHG5O94827 1062 aa12.17□□□□□ -0.46
RETREG1-202ENST00000399793 IRX6P78412 446 aaPredicted RBP12.15□□□□□ -0.46
RETREG1-202ENST00000399793 DHX57Q6P158 1386 aaKnown RBP12.13□□□□□ -0.47
RETREG1-202ENST00000399793 TNIKQ9UKE5 1360 aa12.1□□□□□ -0.47
RETREG1-202ENST00000399793 PODXL2Q9NZ53 605 aa12.09□□□□□ -0.47
RETREG1-202ENST00000399793 DDX10Q13206 875 aaKnown RBP12.09□□□□□ -0.47
RETREG1-202ENST00000399793 C11orf95C9JLR9 678 aaPredicted RBP12.08□□□□□ -0.48
RETREG1-202ENST00000399793 WASHC2AQ641Q2 1341 aa12.07□□□□□ -0.48
RETREG1-202ENST00000399793 PPP4R2Q9NY27 417 aa12.06□□□□□ -0.48
RETREG1-202ENST00000399793 DAXXQ9UER7 740 aaPredicted RBP12.06□□□□□ -0.48
RETREG1-202ENST00000399793 CCER2I3L3R5 266 aa12.04□□□□□ -0.48
RETREG1-202ENST00000399793 IPO9Q96P70 1041 aaKnown RBP12.04□□□□□ -0.48
RETREG1-202ENST00000399793 TIMELESSQ9UNS1 1208 aa12.04□□□□□ -0.48
RETREG1-202ENST00000399793 ZBTB47Q9UFB7 747 aaPredicted RBP12.04□□□□□ -0.48
RETREG1-202ENST00000399793 NACADO15069 1562 aa12.04□□□□□ -0.48
RETREG1-202ENST00000399793 BRPF3Q9ULD4 1205 aa12.03□□□□□ -0.48
RETREG1-202ENST00000399793 WASHC2CQ9Y4E1 1318 aa12.03□□□□□ -0.48
RETREG1-202ENST00000399793 ANP32AP39687 249 aaKnown RBP12.01□□□□□ -0.49
RETREG1-202ENST00000399793 UBTFP17480 764 aaKnown RBP12□□□□□ -0.49
RETREG1-202ENST00000399793 B4GALNT3Q6L9W6 998 aa12□□□□□ -0.49
RETREG1-202ENST00000399793 ZMYND15Q9H091 742 aa12□□□□□ -0.49
RETREG1-202ENST00000399793 PPP1R15AO75807 674 aaPredicted RBP11.99□□□□□ -0.49
RETREG1-202ENST00000399793 RSPH6AQ9H0K4 717 aa11.99□□□□□ -0.49
RETREG1-202ENST00000399793 ANP32CO43423 234 aa11.97□□□□□ -0.49
RETREG1-202ENST00000399793 GLIPR1L2Q4G1C9 344 aa11.97□□□□□ -0.49
RETREG1-202ENST00000399793 NEFMP07197 916 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms