Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CUX1P39880 ZNF626-203ENST00000601440 5963 ntTSL 4 BASIC11.78□□□□□ -0.52
CUX1P39880 BRCC3-203ENST00000369459 2641 ntTSL 5 BASIC11.78□□□□□ -0.52
CUX1P39880 ACER3-212ENST00000532485 7378 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CUX1P39880 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
CUX1P39880 NR1I2-203ENST00000466380 4306 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
CUX1P39880 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CUX1P39880 ZNF317-202ENST00000360385 3955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
CUX1P39880 FTO-222ENST00000637969 2889 ntTSL 5 BASIC11.77□□□□□ -0.52
CUX1P39880 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CUX1P39880 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CUX1P39880 RN7SKP129-201ENST00000410288 299 ntBASIC11.77□□□□□ -0.52
CUX1P39880 AC093664.1-201ENST00000511779 289 ntBASIC11.77□□□□□ -0.52
CUX1P39880 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC11.77□□□□□ -0.52
CUX1P39880 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CUX1P39880 NPR3-202ENST00000326958 6380 ntTSL 2 BASIC11.77□□□□□ -0.53
CUX1P39880 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CUX1P39880 ALDH6A1-202ENST00000553458 5499 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
CUX1P39880 AC090983.1-201ENST00000623426 3897 ntBASIC11.77□□□□□ -0.53
CUX1P39880 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CUX1P39880 NLRP1-204ENST00000354411 4332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
CUX1P39880 NRP1-212ENST00000432372 4137 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CUX1P39880 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CUX1P39880 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 MTHFD1-202ENST00000545908 6814 ntTSL 2 BASIC11.76□□□□□ -0.53
CUX1P39880 RAB3GAP1-201ENST00000264158 4914 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 SNRPD1-201ENST00000300413 4909 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 ODF3-202ENST00000342593 386 ntTSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 POU5F1P5-201ENST00000445059 658 ntBASIC11.76□□□□□ -0.53
CUX1P39880 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 AC083806.1-201ENST00000468934 316 ntBASIC11.76□□□□□ -0.53
CUX1P39880 RN7SL379P-201ENST00000479912 293 ntBASIC11.76□□□□□ -0.53
CUX1P39880 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC11.76□□□□□ -0.53
CUX1P39880 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC11.76□□□□□ -0.53
CUX1P39880 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC11.76□□□□□ -0.53
CUX1P39880 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC11.76□□□□□ -0.53
CUX1P39880 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 AC026826.3-201ENST00000561747 158 ntBASIC11.76□□□□□ -0.53
CUX1P39880 AC104984.3-201ENST00000581946 546 ntTSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 SKA2-207ENST00000583380 583 ntTSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 AC009955.2-201ENST00000597288 542 ntBASIC11.76□□□□□ -0.53
CUX1P39880 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
CUX1P39880 PRDM10-201ENST00000304538 5817 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 SAMMSON-222ENST00000641901 2727 ntBASIC11.76□□□□□ -0.53
CUX1P39880 USP6-205ENST00000574788 8464 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 SMAD9-203ENST00000399275 5389 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 MYEF2-202ENST00000324324 10360 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 MIPOL1-202ENST00000396294 6258 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 TCF4-203ENST00000398339 2551 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 ZNF300-202ENST00000394226 3256 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 CD46-208ENST00000367042 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 OR2M4-202ENST00000641868 5934 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
CUX1P39880 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CUX1P39880 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CUX1P39880 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC11.76□□□□□ -0.53
CUX1P39880 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC11.76□□□□□ -0.53
CUX1P39880 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC11.76□□□□□ -0.53
CUX1P39880 HMGN1P2-201ENST00000445197 310 ntBASIC11.76□□□□□ -0.53
CUX1P39880 AC122718.2-201ENST00000505325 591 ntBASIC11.76□□□□□ -0.53
CUX1P39880 AC109588.1-201ENST00000507759 726 ntTSL 3 BASIC11.76□□□□□ -0.53
CUX1P39880 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC11.76□□□□□ -0.53
CUX1P39880 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC11.76□□□□□ -0.53
CUX1P39880 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC11.76□□□□□ -0.53
CUX1P39880 AC011921.2-201ENST00000589465 152 ntBASIC11.76□□□□□ -0.53
CUX1P39880 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC11.76□□□□□ -0.53
CUX1P39880 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC11.76□□□□□ -0.53
CUX1P39880 AL035410.2-201ENST00000604963 864 ntBASIC11.76□□□□□ -0.53
CUX1P39880 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC11.76□□□□□ -0.53
CUX1P39880 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CUX1P39880 GREB1L-201ENST00000269218 5600 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 RYR2-202ENST00000366574 16562 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CUX1P39880 CACNB2-213ENST00000612134 3825 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 OR8G1-202ENST00000641972 5055 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
CUX1P39880 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 GAS7-201ENST00000323816 8033 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CUX1P39880 GAS7-204ENST00000437099 8003 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CUX1P39880 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
CUX1P39880 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC11.75□□□□□ -0.53
CUX1P39880 ARHGEF7-203ENST00000375723 4957 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 ATG13-207ENST00000526508 4199 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 NSD2-205ENST00000382892 7706 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CUX1P39880 C2orf71-201ENST00000331664 7044 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CUX1P39880 MASP1-205ENST00000392472 3900 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CUX1P39880 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC11.75□□□□□ -0.53
CUX1P39880 SELENOT-202ENST00000471696 3469 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CUX1P39880 SLC9A6-214ENST00000637581 4872 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 FRMPD4-202ENST00000616992 7916 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 LINC01613-201ENST00000561476 2780 ntBASIC11.75□□□□□ -0.53
CUX1P39880 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 NOX1-203ENST00000372964 661 ntTSL 2 BASIC11.75□□□□□ -0.53
CUX1P39880 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC11.75□□□□□ -0.53
CUX1P39880 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC11.75□□□□□ -0.53
CUX1P39880 RPS26P11-201ENST00000463445 348 ntBASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms