RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 MYT1Q01538 1121 aa16.32■□□□□ 0.2
SMAD9-203ENST00000399275 PELP1Q8IZL8 1130 aaKnown RBP16.17■□□□□ 0.18
SMAD9-203ENST00000399275 NISCHQ9Y2I1 1504 aa15.89■□□□□ 0.13
SMAD9-203ENST00000399275 ERICH6Q7L0X2 663 aa15.36■□□□□ 0.05
SMAD9-203ENST00000399275 TTBK1Q5TCY1 1321 aaPredicted RBP15.32■□□□□ 0.04
SMAD9-203ENST00000399275 SUPT5HO00267 1087 aaKnown RBP15.19■□□□□ 0.02
SMAD9-203ENST00000399275 CCER1Q8TC90 406 aaPredicted RBP15.13■□□□□ 0.01
SMAD9-203ENST00000399275 DCAF8L2P0C7V8 631 aa15.1■□□□□ 0.01
SMAD9-203ENST00000399275 CENPBP07199 599 aaPredicted RBP15.06■□□□□ 0
SMAD9-203ENST00000399275 SHROOM4Q9ULL8 1493 aa14.88□□□□□ -0.03
SMAD9-203ENST00000399275 PCGF6Q9BYE7 350 aa14.8□□□□□ -0.04
SMAD9-203ENST00000399275 ZEB1P37275 1124 aaPredicted RBP14.76□□□□□ -0.05
SMAD9-203ENST00000399275 YTHDC1Q96MU7 727 aaKnown RBP14.72□□□□□ -0.05
SMAD9-203ENST00000399275 HRCP23327 699 aa14.65□□□□□ -0.06
SMAD9-203ENST00000399275 NEFLP07196 543 aa14.48□□□□□ -0.09
SMAD9-203ENST00000399275 TRIM26Q12899 539 aaPredicted RBP14.34□□□□□ -0.11
SMAD9-203ENST00000399275 RTL5Q5HYW3 569 aaPredicted RBP14.31□□□□□ -0.12
SMAD9-203ENST00000399275 EHMT2Q96KQ7 1210 aa14.3□□□□□ -0.12
SMAD9-203ENST00000399275 GLIPR1L2Q4G1C9 344 aa14.24□□□□□ -0.13
SMAD9-203ENST00000399275 DAXXQ9UER7 740 aaPredicted RBP14.22□□□□□ -0.13
SMAD9-203ENST00000399275 FAM9AQ8IZU1 332 aaPredicted RBP14.19□□□□□ -0.14
SMAD9-203ENST00000399275 APLP2Q06481 763 aa14.18□□□□□ -0.14
SMAD9-203ENST00000399275 EIF5BO60841 1220 aaKnown RBP14.18□□□□□ -0.14
SMAD9-203ENST00000399275 TRIM41Q8WV44 630 aa14.15□□□□□ -0.14
SMAD9-203ENST00000399275 CHIC1Q5VXU3 224 aa14.12□□□□□ -0.15
SMAD9-203ENST00000399275 PPARGC1BQ86YN6 1023 aaKnown RBP14.12□□□□□ -0.15
SMAD9-203ENST00000399275 RANGAP1P46060 587 aaPredicted RBP13.92□□□□□ -0.18
SMAD9-203ENST00000399275 LOC105371045A0A1W2PR82 267 aa13.9□□□□□ -0.18
SMAD9-203ENST00000399275 GTF3C3Q9Y5Q9 886 aa13.87□□□□□ -0.19
SMAD9-203ENST00000399275 ZNF316A6NFI3 1004 aaPredicted RBP13.86□□□□□ -0.19
SMAD9-203ENST00000399275 DIEXFQ68CQ4 756 aaKnown RBP13.83□□□□□ -0.2
SMAD9-203ENST00000399275 MYT1LQ9UL68 1186 aa13.77□□□□□ -0.21
SMAD9-203ENST00000399275 UBTFP17480 764 aaKnown RBP13.75□□□□□ -0.21
SMAD9-203ENST00000399275 ACIN1Q9UKV3 1341 aaKnown RBP13.74□□□□□ -0.21
SMAD9-203ENST00000399275 DCAF1Q9Y4B6 1507 aa13.72□□□□□ -0.21
SMAD9-203ENST00000399275 BCL11AQ9H165 835 aa13.67□□□□□ -0.22
SMAD9-203ENST00000399275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.65□□□□□ -0.22
SMAD9-203ENST00000399275 CDK11AQ9UQ88 783 aaPredicted RBP13.6□□□□□ -0.23
SMAD9-203ENST00000399275 BCANQ96GW7 911 aa13.55□□□□□ -0.24
SMAD9-203ENST00000399275 SLC24A1O60721 1099 aa13.55□□□□□ -0.24
SMAD9-203ENST00000399275 SCAF1Q9H7N4 1312 aaKnown RBP13.53□□□□□ -0.24
SMAD9-203ENST00000399275 CLSPNQ9HAW4 1339 aa13.52□□□□□ -0.24
SMAD9-203ENST00000399275 HNRNPUL2Q1KMD3 747 aaKnown RBP13.47□□□□□ -0.25
SMAD9-203ENST00000399275 TNNT2P45379 298 aaPredicted RBP13.45□□□□□ -0.26
SMAD9-203ENST00000399275 ANP32AP39687 249 aaKnown RBP13.44□□□□□ -0.26
SMAD9-203ENST00000399275 ANP32EQ9BTT0 268 aa13.43□□□□□ -0.26
SMAD9-203ENST00000399275 NEUROD1Q13562 356 aa13.39□□□□□ -0.27
SMAD9-203ENST00000399275 CDK11BP21127 795 aaKnown RBP13.38□□□□□ -0.27
SMAD9-203ENST00000399275 CCDC180Q9P1Z9 1646 aa13.37□□□□□ -0.27
SMAD9-203ENST00000399275 ANP32BQ92688 251 aaKnown RBP13.36□□□□□ -0.27
SMAD9-203ENST00000399275 NBR1Q14596 966 aa13.33□□□□□ -0.28
SMAD9-203ENST00000399275 ATP1B4Q9UN42 357 aaPredicted RBP13.32□□□□□ -0.28
SMAD9-203ENST00000399275 MYO15BQ96JP2 1530 aa13.32□□□□□ -0.28
SMAD9-203ENST00000399275 ZCCHC6Q5VYS8 1495 aaKnown RBP13.31□□□□□ -0.28
SMAD9-203ENST00000399275 ITGAEP38570 1179 aa13.24□□□□□ -0.29
SMAD9-203ENST00000399275 NCLP19338 710 aaKnown RBP13.23□□□□□ -0.29
SMAD9-203ENST00000399275 POLR3GLQ9BT43 218 aa13.21□□□□□ -0.3
SMAD9-203ENST00000399275 RTN4Q9NQC3 1192 aaKnown RBP13.2□□□□□ -0.3
SMAD9-203ENST00000399275 NPM2Q86SE8 214 aaKnown RBP13.19□□□□□ -0.3
SMAD9-203ENST00000399275 ANP32CO43423 234 aa13.19□□□□□ -0.3
SMAD9-203ENST00000399275 TRIM44Q96DX7 344 aaPredicted RBP13.19□□□□□ -0.3
SMAD9-203ENST00000399275 ERICH6BQ5W0A0 696 aa13.17□□□□□ -0.3
SMAD9-203ENST00000399275 AMER1Q5JTC6 1135 aaPredicted RBP13.16□□□□□ -0.3
SMAD9-203ENST00000399275 ZBTB47Q9UFB7 747 aaPredicted RBP13.15□□□□□ -0.3
SMAD9-203ENST00000399275 PRKCSHP14314 528 aaPredicted RBP13.14□□□□□ -0.31
SMAD9-203ENST00000399275 NAP1L5Q96NT1 182 aaPredicted RBP13.12□□□□□ -0.31
SMAD9-203ENST00000399275 ABCC9O60706 1549 aa13.1□□□□□ -0.31
SMAD9-203ENST00000399275 ZNF326Q5BKZ1 582 aaKnown RBP13.1□□□□□ -0.31
SMAD9-203ENST00000399275 FKBP8Q14318 412 aa13.07□□□□□ -0.32
SMAD9-203ENST00000399275 PODXL2Q9NZ53 605 aa13.06□□□□□ -0.32
SMAD9-203ENST00000399275 ARXQ96QS3 562 aa13.06□□□□□ -0.32
SMAD9-203ENST00000399275 MIER1Q8N108 512 aa13.05□□□□□ -0.32
SMAD9-203ENST00000399275 CSRNP3Q8WYN3 585 aa13.04□□□□□ -0.32
SMAD9-203ENST00000399275 NEFMP07197 916 aa13.03□□□□□ -0.32
SMAD9-203ENST00000399275 CNGB1Q14028 1251 aaPredicted RBP13.03□□□□□ -0.32
SMAD9-203ENST00000399275 SCRIBQ14160 1630 aa13.02□□□□□ -0.32
SMAD9-203ENST00000399275 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.02□□□□□ -0.33
SMAD9-203ENST00000399275 FAM50AQ14320 339 aaKnown RBP12.99□□□□□ -0.33
SMAD9-203ENST00000399275 DEKP35659 375 aaKnown RBP12.95□□□□□ -0.34
SMAD9-203ENST00000399275 VSIG10Q8N0Z9 540 aa12.93□□□□□ -0.34
SMAD9-203ENST00000399275 HSP90AA1P07900 732 aaKnown RBP12.92□□□□□ -0.34
SMAD9-203ENST00000399275 A0A0U1RQG5 324 aaPredicted RBP12.9□□□□□ -0.34
SMAD9-203ENST00000399275 PKNOX2Q96KN3 472 aa12.9□□□□□ -0.34
SMAD9-203ENST00000399275 CCDC136Q96JN2 1154 aa12.87□□□□□ -0.35
SMAD9-203ENST00000399275 PABPN1Q86U42 306 aaKnown RBP eCLIP12.85□□□□□ -0.35
SMAD9-203ENST00000399275 TNNT3P45378 269 aaPredicted RBP12.85□□□□□ -0.35
SMAD9-203ENST00000399275 SUPT16HQ9Y5B9 1047 aaKnown RBP12.85□□□□□ -0.35
SMAD9-203ENST00000399275 UPF2Q9HAU5 1272 aaKnown RBP12.84□□□□□ -0.35
SMAD9-203ENST00000399275 PTMSP20962 102 aa12.84□□□□□ -0.35
SMAD9-203ENST00000399275 DDX10Q13206 875 aaKnown RBP12.83□□□□□ -0.36
SMAD9-203ENST00000399275 TRIM52Q96A61 297 aa12.83□□□□□ -0.36
SMAD9-203ENST00000399275 HNRNPUQ00839 825 aaKnown RBP eCLIP12.82□□□□□ -0.36
SMAD9-203ENST00000399275 EEA1Q15075 1411 aa12.82□□□□□ -0.36
SMAD9-203ENST00000399275 DNTTIP2Q5QJE6 756 aaKnown RBP12.82□□□□□ -0.36
SMAD9-203ENST00000399275 PPM1GO15355 546 aaPredicted RBP12.81□□□□□ -0.36
SMAD9-203ENST00000399275 CEP162Q5TB80 1403 aa12.8□□□□□ -0.36
SMAD9-203ENST00000399275 TONSLQ96HA7 1378 aa12.78□□□□□ -0.36
SMAD9-203ENST00000399275 CALRP27797 417 aaKnown RBP12.77□□□□□ -0.37
SMAD9-203ENST00000399275 RSF1Q96T23 1441 aaPredicted RBP12.77□□□□□ -0.37
SMAD9-203ENST00000399275 ARID4BQ4LE39 1312 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms