Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS28Q9UK41 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS28Q9UK41 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS28Q9UK41 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 AC006557.6-201ENST00000623071 864 ntBASIC20.59■□□□□ 0.89
VPS28Q9UK41 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS28Q9UK41 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
VPS28Q9UK41 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
VPS28Q9UK41 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS28Q9UK41 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS28Q9UK41 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
VPS28Q9UK41 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS28Q9UK41 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS28Q9UK41 AC092720.2-201ENST00000602388 1665 ntBASIC20.58■□□□□ 0.89
VPS28Q9UK41 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS28Q9UK41 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS28Q9UK41 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS28Q9UK41 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
VPS28Q9UK41 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.58■□□□□ 0.89
VPS28Q9UK41 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS28Q9UK41 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.58■□□□□ 0.89
VPS28Q9UK41 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS28Q9UK41 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
VPS28Q9UK41 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.58■□□□□ 0.89
VPS28Q9UK41 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS28Q9UK41 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS28Q9UK41 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS28Q9UK41 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS28Q9UK41 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS28Q9UK41 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS28Q9UK41 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS28Q9UK41 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS28Q9UK41 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.57■□□□□ 0.88
VPS28Q9UK41 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 AC128676.1-201ENST00000454392 318 ntBASIC20.57■□□□□ 0.88
VPS28Q9UK41 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 AC023632.3-201ENST00000521633 145 ntBASIC20.57■□□□□ 0.88
VPS28Q9UK41 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS28Q9UK41 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS28Q9UK41 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS28Q9UK41 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS28Q9UK41 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
VPS28Q9UK41 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS28Q9UK41 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VPS28Q9UK41 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS28Q9UK41 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS28Q9UK41 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS28Q9UK41 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS28Q9UK41 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS28Q9UK41 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 AC008687.6-201ENST00000596318 630 ntBASIC20.56■□□□□ 0.88
VPS28Q9UK41 AC073648.6-201ENST00000641589 218 ntBASIC20.56■□□□□ 0.88
VPS28Q9UK41 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS28Q9UK41 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS28Q9UK41 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS28Q9UK41 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS28Q9UK41 DPP3P2-201ENST00000416030 1696 ntBASIC20.55■□□□□ 0.88
VPS28Q9UK41 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS28Q9UK41 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VPS28Q9UK41 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS28Q9UK41 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS28Q9UK41 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS28Q9UK41 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS28Q9UK41 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS28Q9UK41 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS28Q9UK41 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS28Q9UK41 KRT17P3-201ENST00000420566 1262 ntBASIC20.55■□□□□ 0.88
VPS28Q9UK41 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.55■□□□□ 0.88
VPS28Q9UK41 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS28Q9UK41 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS28Q9UK41 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS28Q9UK41 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS28Q9UK41 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS28Q9UK41 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms