Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 AC099778.1-201ENST00000568593 1911 ntBASIC20.56■□□□□ 0.88
RTL3Q8N8U3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTL3Q8N8U3 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 UNC93B5-201ENST00000530315 699 ntBASIC20.55■□□□□ 0.88
RTL3Q8N8U3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
RTL3Q8N8U3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.54■□□□□ 0.88
RTL3Q8N8U3 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 AC006557.6-201ENST00000623071 864 ntBASIC20.54■□□□□ 0.88
RTL3Q8N8U3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 AL391422.3-201ENST00000603791 2761 ntBASIC20.54■□□□□ 0.88
RTL3Q8N8U3 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RTL3Q8N8U3 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 KRT16P6-202ENST00000425692 1426 ntBASIC20.53■□□□□ 0.88
RTL3Q8N8U3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 CD99P1-205ENST00000527459 561 ntBASIC20.53■□□□□ 0.88
RTL3Q8N8U3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTL3Q8N8U3 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RTL3Q8N8U3 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.52■□□□□ 0.88
RTL3Q8N8U3 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RTL3Q8N8U3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RTL3Q8N8U3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RTL3Q8N8U3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
RTL3Q8N8U3 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms