Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 AC104564.3-201ENST00000582367 638 ntBASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 AL513477.1-201ENST00000602865 2407 ntBASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.71■□□□□ 0.26
CCDC28AQ8IWP9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 AP004607.7-201ENST00000527152 1677 ntBASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 AC026471.6-201ENST00000622954 1905 ntBASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CCDC28AQ8IWP9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 LINC01529-204ENST00000636474 1715 ntBASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC28AQ8IWP9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 MIR4281-201ENST00000580852 62 ntBASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 CA15P2-201ENST00000611168 834 ntBASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 MST1L-201ENST00000442552 2185 ntBASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC28AQ8IWP9 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms