Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIST1H1AQ02539 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIST1H1AQ02539 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HIST1H1AQ02539 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIST1H1AQ02539 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HIST1H1AQ02539 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HIST1H1AQ02539 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HIST1H1AQ02539 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC15.27■□□□□ 0.04
HIST1H1AQ02539 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 AFG3L1P-217ENST00000557444 2447 ntBASIC15.27■□□□□ 0.03
HIST1H1AQ02539 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 AC090340.1-201ENST00000620778 4980 ntBASIC15.27■□□□□ 0.03
HIST1H1AQ02539 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HIST1H1AQ02539 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HIST1H1AQ02539 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 AC007322.3-201ENST00000426526 701 ntBASIC15.25■□□□□ 0.03
HIST1H1AQ02539 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 AC099778.1-201ENST00000568593 1911 ntBASIC15.25■□□□□ 0.03
HIST1H1AQ02539 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 RBM17P2-201ENST00000616397 1405 ntBASIC15.25■□□□□ 0.03
HIST1H1AQ02539 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HIST1H1AQ02539 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms