Protein–RNA interactions for Protein: P40080

VFA1, VPS4-associated protein 1, yeastyeast

Predictions only

Length 203 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VFA1P40080 YDL196WYDL196W 330 nt1.47□□□□□ -2.17
VFA1P40080 YDR354C-AYDR354C-A 144 nt1.47□□□□□ -2.17
VFA1P40080 APL3YBL037W 3078 nt1.47□□□□□ -2.17
VFA1P40080 STO1YMR125W 2586 nt1.46□□□□□ -2.18
VFA1P40080 YJL026C-AYJL026C-A 222 nt1.46□□□□□ -2.18
VFA1P40080 YBR221W-AYBR221W-A 105 nt1.46□□□□□ -2.18
VFA1P40080 YDL185C-AYDL185C-A 228 nt1.45□□□□□ -2.18
VFA1P40080 SXM1YDR395W 2835 nt1.45□□□□□ -2.18
VFA1P40080 SBE22YHR103W 2559 nt1.45□□□□□ -2.18
VFA1P40080 AZF1YOR113W 2745 nt1.45□□□□□ -2.18
VFA1P40080 LAA1YJL207C 6045 nt1.45□□□□□ -2.18
VFA1P40080 YBR131C-AYBR131C-A 90 nt1.44□□□□□ -2.18
VFA1P40080 NUP188YML103C 4968 nt1.43□□□□□ -2.18
VFA1P40080 FYV8YGR196C 2454 nt1.43□□□□□ -2.18
VFA1P40080 CDC25YLR310C 4770 nt1.43□□□□□ -2.18
VFA1P40080 NUP145YGL092W 3954 nt1.43□□□□□ -2.18
VFA1P40080 ULI1YFR026C 510 nt1.43□□□□□ -2.18
VFA1P40080 MSN5YDR335W 3675 nt1.43□□□□□ -2.18
VFA1P40080 CHS1YNL192W 3396 nt1.42□□□□□ -2.18
VFA1P40080 YOR345CYOR345C 351 nt1.42□□□□□ -2.18
VFA1P40080 APL1YJR005W 2103 nt1.41□□□□□ -2.18
VFA1P40080 CLU1YMR012W 3834 nt1.41□□□□□ -2.18
VFA1P40080 MSH3YCR092C 3057 nt1.4□□□□□ -2.19
VFA1P40080 YEL014CYEL014C 306 nt1.4□□□□□ -2.19
VFA1P40080 ROM2YLR371W 4071 nt1.4□□□□□ -2.19
VFA1P40080 WAR1YML076C 2835 nt1.39□□□□□ -2.19
VFA1P40080 YAL067W-AYAL067W-A 228 nt1.39□□□□□ -2.19
VFA1P40080 YNL211CYNL211C 261 nt1.39□□□□□ -2.19
VFA1P40080 HAL9YOL089C 3093 nt1.38□□□□□ -2.19
VFA1P40080 PAA1YDR071C 576 nt1.38□□□□□ -2.19
VFA1P40080 YLL020CYLL020C 306 nt1.38□□□□□ -2.19
VFA1P40080 YBR200W-AYBR200W-A 165 nt1.38□□□□□ -2.19
VFA1P40080 PIK1YNL267W 3201 nt1.38□□□□□ -2.19
VFA1P40080 SPC110YDR356W 2835 nt1.37□□□□□ -2.19
VFA1P40080 snR46snR46 197 nt1.37□□□□□ -2.19
VFA1P40080 tH(GUG)E1tH(GUG)E1 72 nt1.36□□□□□ -2.19
VFA1P40080 tH(GUG)E2tH(GUG)E2 72 nt1.36□□□□□ -2.19
VFA1P40080 tH(GUG)G1tH(GUG)G1 72 nt1.36□□□□□ -2.19
VFA1P40080 tH(GUG)G2tH(GUG)G2 72 nt1.36□□□□□ -2.19
VFA1P40080 tH(GUG)HtH(GUG)H 72 nt1.36□□□□□ -2.19
VFA1P40080 tH(GUG)KtH(GUG)K 72 nt1.36□□□□□ -2.19
VFA1P40080 tH(GUG)MtH(GUG)M 72 nt1.36□□□□□ -2.19
VFA1P40080 SEC3YER008C 4011 nt1.36□□□□□ -2.19
VFA1P40080 SMC1YFL008W 3678 nt1.36□□□□□ -2.19
VFA1P40080 SSK2YNR031C 4740 nt1.35□□□□□ -2.19
VFA1P40080 EAF1YDR359C 2949 nt1.35□□□□□ -2.19
VFA1P40080 YIL134C-AYIL134C-A 204 nt1.35□□□□□ -2.19
VFA1P40080 HUG1YML058W-A 207 nt1.35□□□□□ -2.19
VFA1P40080 RPL33BYOR234C 324 nt1.35□□□□□ -2.19
VFA1P40080 CDC39YCR093W 6327 nt1.35□□□□□ -2.19
VFA1P40080 NUP157YER105C 4176 nt1.34□□□□□ -2.19
VFA1P40080 STB6YKL072W 2301 nt1.34□□□□□ -2.19
VFA1P40080 TTI1YKL033W 3117 nt1.34□□□□□ -2.19
VFA1P40080 STF2YGR008C 255 nt1.34□□□□□ -2.19
VFA1P40080 CMC4YMR194C-B 222 nt1.34□□□□□ -2.19
VFA1P40080 RPS30BYOR182C 192 nt1.34□□□□□ -2.19
VFA1P40080 YOR225WYOR225W 330 nt1.34□□□□□ -2.19
VFA1P40080 RSM22YKL155C 1887 nt1.34□□□□□ -2.19
VFA1P40080 NOP9YJL010C 2001 nt1.33□□□□□ -2.2
VFA1P40080 COX12YLR038C 252 nt1.33□□□□□ -2.2
VFA1P40080 Q0032Q0032 291 nt1.32□□□□□ -2.2
VFA1P40080 YGL007C-AYGL007C-A 87 nt1.32□□□□□ -2.2
VFA1P40080 YJL182CYJL182C 318 nt1.32□□□□□ -2.2
VFA1P40080 YNL198CYNL198C 303 nt1.32□□□□□ -2.2
VFA1P40080 YJL150WYJL150W 303 nt1.31□□□□□ -2.2
VFA1P40080 COY1YKL179C 2040 nt1.3□□□□□ -2.2
VFA1P40080 YLR466C-BYLR466C-B 117 nt1.29□□□□□ -2.2
VFA1P40080 YGR130CYGR130C 2451 nt1.28□□□□□ -2.2
VFA1P40080 YPL044CYPL044C 549 nt1.28□□□□□ -2.2
VFA1P40080 GEA2YEL022W 4380 nt1.28□□□□□ -2.21
VFA1P40080 KAP120YPL125W 3099 nt1.27□□□□□ -2.21
VFA1P40080 ASE1YOR058C 2658 nt1.27□□□□□ -2.21
VFA1P40080 HKR1YDR420W 5409 nt1.26□□□□□ -2.21
VFA1P40080 snR52snR52 92 nt1.26□□□□□ -2.21
VFA1P40080 YNL284C-BYNL284C-B 5268 nt1.25□□□□□ -2.21
VFA1P40080 SEC21YNL287W 2808 nt1.25□□□□□ -2.21
VFA1P40080 YCR038W-AYCR038W-A 126 nt1.25□□□□□ -2.21
VFA1P40080 YFR012W-AYFR012W-A 87 nt1.25□□□□□ -2.21
VFA1P40080 YGL123C-AYGL123C-A 231 nt1.25□□□□□ -2.21
VFA1P40080 RPL26BYGR034W 384 nt1.25□□□□□ -2.21
VFA1P40080 YGR151CYGR151C 336 nt1.25□□□□□ -2.21
VFA1P40080 YIL002W-AYIL002W-A 210 nt1.25□□□□□ -2.21
VFA1P40080 YIL020C-AYIL020C-A 339 nt1.25□□□□□ -2.21
VFA1P40080 PRP39YML046W 1890 nt1.24□□□□□ -2.21
VFA1P40080 PMP1YCR024C-A 123 nt1.24□□□□□ -2.21
VFA1P40080 YLR342W-AYLR342W-A 174 nt1.24□□□□□ -2.21
VFA1P40080 COX5BYIL111W 456 nt1.23□□□□□ -2.21
VFA1P40080 YKL100W-AYKL100W-A 90 nt1.22□□□□□ -2.21
VFA1P40080 YLR282CYLR282C 342 nt1.22□□□□□ -2.21
VFA1P40080 YOR161W-AYOR161W-A 81 nt1.22□□□□□ -2.21
VFA1P40080 YEL073CYEL073C 324 nt1.21□□□□□ -2.22
VFA1P40080 YER053C-AYER053C-A 114 nt1.2□□□□□ -2.22
VFA1P40080 SIP4YJL089W 2490 nt1.19□□□□□ -2.22
VFA1P40080 snR190snR190 190 nt1.19□□□□□ -2.22
VFA1P40080 BEM2YER155C 6504 nt1.19□□□□□ -2.22
VFA1P40080 IML1YJR138W 4755 nt1.17□□□□□ -2.22
VFA1P40080 PRP16YKR086W 3216 nt1.17□□□□□ -2.22
VFA1P40080 TRS65YGR166W 1683 nt1.17□□□□□ -2.22
VFA1P40080 BFR2YDR299W 1605 nt1.17□□□□□ -2.22
VFA1P40080 YML002WYML002W 2214 nt1.17□□□□□ -2.22
Retrieved 100 of 7,029 protein–RNA pairs in 54 ms