Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX2P35548 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
MSX2P35548 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
MSX2P35548 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSX2P35548 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSX2P35548 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.65
MSX2P35548 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.08■□□□□ 0.65
MSX2P35548 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.08■□□□□ 0.64
MSX2P35548 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSX2P35548 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.08■□□□□ 0.64
MSX2P35548 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.08■□□□□ 0.64
MSX2P35548 AC008175.2-201ENST00000612840 297 ntBASIC19.08■□□□□ 0.64
MSX2P35548 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSX2P35548 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSX2P35548 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.08■□□□□ 0.64
MSX2P35548 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
MSX2P35548 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.08■□□□□ 0.64
MSX2P35548 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.07■□□□□ 0.64
MSX2P35548 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.07■□□□□ 0.64
MSX2P35548 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
MSX2P35548 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.07■□□□□ 0.64
MSX2P35548 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
MSX2P35548 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.07■□□□□ 0.64
MSX2P35548 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
MSX2P35548 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
MSX2P35548 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX2P35548 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.07■□□□□ 0.64
MSX2P35548 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.06■□□□□ 0.64
MSX2P35548 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.06■□□□□ 0.64
MSX2P35548 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.06■□□□□ 0.64
MSX2P35548 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.06■□□□□ 0.64
MSX2P35548 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX2P35548 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX2P35548 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX2P35548 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX2P35548 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX2P35548 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
MSX2P35548 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.06■□□□□ 0.64
MSX2P35548 POU5F1P4-201ENST00000413175 1085 ntBASIC19.06■□□□□ 0.64
MSX2P35548 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.06■□□□□ 0.64
MSX2P35548 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.06■□□□□ 0.64
MSX2P35548 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.06■□□□□ 0.64
MSX2P35548 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
MSX2P35548 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.06■□□□□ 0.64
MSX2P35548 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX2P35548 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
MSX2P35548 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.05■□□□□ 0.64
MSX2P35548 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.05■□□□□ 0.64
MSX2P35548 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
MSX2P35548 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
MSX2P35548 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 AC099791.1-201ENST00000416440 715 ntBASIC19.05■□□□□ 0.64
MSX2P35548 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
MSX2P35548 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 AC245052.3-201ENST00000450182 901 ntBASIC19.05■□□□□ 0.64
MSX2P35548 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.05■□□□□ 0.64
MSX2P35548 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
MSX2P35548 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
MSX2P35548 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX2P35548 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.04■□□□□ 0.64
MSX2P35548 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX2P35548 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.04■□□□□ 0.64
MSX2P35548 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.04■□□□□ 0.64
MSX2P35548 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX2P35548 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.04■□□□□ 0.64
MSX2P35548 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSX2P35548 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSX2P35548 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.04■□□□□ 0.64
MSX2P35548 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX2P35548 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.04■□□□□ 0.64
MSX2P35548 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSX2P35548 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.04■□□□□ 0.64
MSX2P35548 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms