Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.59■□□□□ 0.73
SHMT2P34897 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.59■□□□□ 0.73
SHMT2P34897 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.59■□□□□ 0.73
SHMT2P34897 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHMT2P34897 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.59■□□□□ 0.73
SHMT2P34897 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHMT2P34897 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.59■□□□□ 0.73
SHMT2P34897 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.59■□□□□ 0.73
SHMT2P34897 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.59■□□□□ 0.73
SHMT2P34897 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SHMT2P34897 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.59■□□□□ 0.73
SHMT2P34897 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHMT2P34897 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHMT2P34897 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHMT2P34897 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.59■□□□□ 0.73
SHMT2P34897 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SHMT2P34897 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHMT2P34897 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
SHMT2P34897 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.58■□□□□ 0.73
SHMT2P34897 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.58■□□□□ 0.73
SHMT2P34897 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHMT2P34897 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SHMT2P34897 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.58■□□□□ 0.73
SHMT2P34897 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SHMT2P34897 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHMT2P34897 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.58■□□□□ 0.73
SHMT2P34897 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.58■□□□□ 0.72
SHMT2P34897 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.58■□□□□ 0.72
SHMT2P34897 AFG3L1P-217ENST00000557444 2447 ntBASIC19.58■□□□□ 0.72
SHMT2P34897 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHMT2P34897 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHMT2P34897 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.58■□□□□ 0.72
SHMT2P34897 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.57■□□□□ 0.72
SHMT2P34897 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.57■□□□□ 0.72
SHMT2P34897 AC092368.3-202ENST00000574180 1591 ntBASIC19.57■□□□□ 0.72
SHMT2P34897 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.57■□□□□ 0.72
SHMT2P34897 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.57■□□□□ 0.72
SHMT2P34897 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.57■□□□□ 0.72
SHMT2P34897 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.57■□□□□ 0.72
SHMT2P34897 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.57■□□□□ 0.72
SHMT2P34897 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.57■□□□□ 0.72
SHMT2P34897 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHMT2P34897 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.56■□□□□ 0.72
SHMT2P34897 GABARAPL3-202ENST00000624044 1851 ntBASIC19.56■□□□□ 0.72
SHMT2P34897 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
SHMT2P34897 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SHMT2P34897 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.56■□□□□ 0.72
SHMT2P34897 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.56■□□□□ 0.72
SHMT2P34897 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.56■□□□□ 0.72
SHMT2P34897 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.56■□□□□ 0.72
SHMT2P34897 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.56■□□□□ 0.72
SHMT2P34897 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.56■□□□□ 0.72
SHMT2P34897 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SHMT2P34897 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.56■□□□□ 0.72
SHMT2P34897 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHMT2P34897 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.55■□□□□ 0.72
SHMT2P34897 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 PCDHAC2-203ENST00000615316 3011 ntBASIC19.55■□□□□ 0.72
SHMT2P34897 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.55■□□□□ 0.72
SHMT2P34897 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SHMT2P34897 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.55■□□□□ 0.72
SHMT2P34897 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.55■□□□□ 0.72
SHMT2P34897 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHMT2P34897 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.55■□□□□ 0.72
SHMT2P34897 PNMA6B-201ENST00000538162 1200 ntBASIC19.55■□□□□ 0.72
SHMT2P34897 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.55■□□□□ 0.72
SHMT2P34897 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 AP005212.1-201ENST00000581547 1997 ntBASIC19.55■□□□□ 0.72
SHMT2P34897 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 AC092720.2-201ENST00000602388 1665 ntBASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms