Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN4P29074 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN4P29074 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
PTPN4P29074 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN4P29074 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN4P29074 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.04■□□□□ 0.8
PTPN4P29074 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN4P29074 TSPY6P-201ENST00000448518 926 ntBASIC20.04■□□□□ 0.8
PTPN4P29074 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PTPN4P29074 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
PTPN4P29074 AC142086.2-201ENST00000569753 217 ntBASIC20.04■□□□□ 0.8
PTPN4P29074 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.04■□□□□ 0.8
PTPN4P29074 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN4P29074 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN4P29074 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.04■□□□□ 0.8
PTPN4P29074 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PTPN4P29074 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.03■□□□□ 0.8
PTPN4P29074 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
PTPN4P29074 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN4P29074 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.03■□□□□ 0.8
PTPN4P29074 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN4P29074 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN4P29074 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.03■□□□□ 0.8
PTPN4P29074 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN4P29074 AC125437.2-201ENST00000625180 2167 ntBASIC20.03■□□□□ 0.8
PTPN4P29074 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.03■□□□□ 0.8
PTPN4P29074 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN4P29074 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.03■□□□□ 0.8
PTPN4P29074 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.03■□□□□ 0.8
PTPN4P29074 SLC7A5P2-201ENST00000553010 536 ntBASIC20.03■□□□□ 0.8
PTPN4P29074 AC010536.3-201ENST00000620306 533 ntBASIC20.03■□□□□ 0.8
PTPN4P29074 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.03■□□□□ 0.8
PTPN4P29074 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.03■□□□□ 0.8
PTPN4P29074 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PTPN4P29074 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN4P29074 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
PTPN4P29074 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.03■□□□□ 0.8
PTPN4P29074 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN4P29074 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
PTPN4P29074 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN4P29074 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.03■□□□□ 0.8
PTPN4P29074 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN4P29074 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN4P29074 AL158211.5-201ENST00000623583 2518 ntBASIC20.02■□□□□ 0.8
PTPN4P29074 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN4P29074 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN4P29074 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN4P29074 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.02■□□□□ 0.8
PTPN4P29074 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.02■□□□□ 0.8
PTPN4P29074 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.02■□□□□ 0.8
PTPN4P29074 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
PTPN4P29074 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PTPN4P29074 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN4P29074 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.02■□□□□ 0.8
PTPN4P29074 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PTPN4P29074 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PTPN4P29074 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PTPN4P29074 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.79
PTPN4P29074 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.02■□□□□ 0.79
PTPN4P29074 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PTPN4P29074 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
PTPN4P29074 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.01■□□□□ 0.79
PTPN4P29074 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTPN4P29074 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.01■□□□□ 0.79
PTPN4P29074 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.01■□□□□ 0.79
PTPN4P29074 CNN2P6-201ENST00000439038 900 ntBASIC20.01■□□□□ 0.79
PTPN4P29074 EEF1DP3-203ENST00000566025 782 ntBASIC20.01■□□□□ 0.79
PTPN4P29074 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
PTPN4P29074 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTPN4P29074 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTPN4P29074 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTPN4P29074 AP006587.3-201ENST00000525742 1516 ntBASIC20.01■□□□□ 0.79
PTPN4P29074 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTPN4P29074 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
PTPN4P29074 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20■□□□□ 0.79
PTPN4P29074 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PTPN4P29074 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20■□□□□ 0.79
PTPN4P29074 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20■□□□□ 0.79
PTPN4P29074 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20■□□□□ 0.79
PTPN4P29074 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20■□□□□ 0.79
PTPN4P29074 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20■□□□□ 0.79
PTPN4P29074 APTR-205ENST00000447009 902 ntTSL 2 BASIC20■□□□□ 0.79
PTPN4P29074 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20■□□□□ 0.79
PTPN4P29074 AC053503.5-201ENST00000601508 636 ntBASIC20■□□□□ 0.79
PTPN4P29074 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
PTPN4P29074 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20■□□□□ 0.79
PTPN4P29074 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN4P29074 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN4P29074 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms