Protein–RNA interactions for Protein: P25846

MSH1, DNA mismatch repair protein MSH1, mitochondrial, yeastyeast

Predictions only

Length 959 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH1P25846 AHC1YOR023C 1701 nt1.55□□□□□ -2.16
MSH1P25846 PIP2YOR363C 2991 nt1.55□□□□□ -2.16
MSH1P25846 YIR030W-AYIR030W-A 384 nt1.55□□□□□ -2.16
MSH1P25846 SSK2YNR031C 4740 nt1.55□□□□□ -2.16
MSH1P25846 CAT8YMR280C 4302 nt1.55□□□□□ -2.16
MSH1P25846 YDL206WYDL206W 2289 nt1.54□□□□□ -2.16
MSH1P25846 OLI1Q0130 231 nt1.54□□□□□ -2.16
MSH1P25846 YKU70YMR284W 1809 nt1.53□□□□□ -2.16
MSH1P25846 AZF1YOR113W 2745 nt1.53□□□□□ -2.17
MSH1P25846 YBR206WYBR206W 324 nt1.52□□□□□ -2.17
MSH1P25846 PBY1YBR094W 2262 nt1.52□□□□□ -2.17
MSH1P25846 APL3YBL037W 3078 nt1.52□□□□□ -2.17
MSH1P25846 PIK1YNL267W 3201 nt1.51□□□□□ -2.17
MSH1P25846 NUP145YGL092W 3954 nt1.51□□□□□ -2.17
MSH1P25846 YEL014CYEL014C 306 nt1.51□□□□□ -2.17
MSH1P25846 CDC31YOR257W 486 nt1.51□□□□□ -2.17
MSH1P25846 MCM10YIL150C 1716 nt1.51□□□□□ -2.17
MSH1P25846 MSH3YCR092C 3057 nt1.51□□□□□ -2.17
MSH1P25846 HKR1YDR420W 5409 nt1.5□□□□□ -2.17
MSH1P25846 SET3YKR029C 2256 nt1.5□□□□□ -2.17
MSH1P25846 MDS3YGL197W 4464 nt1.5□□□□□ -2.17
MSH1P25846 YNL338WYNL338W 159 nt1.5□□□□□ -2.17
MSH1P25846 SLD3YGL113W 2007 nt1.5□□□□□ -2.17
MSH1P25846 YOR345CYOR345C 351 nt1.49□□□□□ -2.17
MSH1P25846 FIG4YNL325C 2640 nt1.48□□□□□ -2.17
MSH1P25846 NUP188YML103C 4968 nt1.48□□□□□ -2.17
MSH1P25846 ECM12YHR021W-A 456 nt1.48□□□□□ -2.17
MSH1P25846 YLL020CYLL020C 306 nt1.48□□□□□ -2.17
MSH1P25846 YAR009CYAR009C 3591 nt1.48□□□□□ -2.17
MSH1P25846 CDC25YLR310C 4770 nt1.47□□□□□ -2.17
MSH1P25846 YLL019W-AYLL019W-A 93 nt1.47□□□□□ -2.17
MSH1P25846 YBR221W-AYBR221W-A 105 nt1.47□□□□□ -2.17
MSH1P25846 TRS65YGR166W 1683 nt1.47□□□□□ -2.17
MSH1P25846 YOR072W-BYOR072W-B 162 nt1.46□□□□□ -2.18
MSH1P25846 SEC21YNL287W 2808 nt1.46□□□□□ -2.18
MSH1P25846 PRP39YML046W 1890 nt1.46□□□□□ -2.18
MSH1P25846 STO1YMR125W 2586 nt1.45□□□□□ -2.18
MSH1P25846 SEC3YER008C 4011 nt1.44□□□□□ -2.18
MSH1P25846 ULI1YFR026C 510 nt1.44□□□□□ -2.18
MSH1P25846 snR46snR46 197 nt1.44□□□□□ -2.18
MSH1P25846 YDL196WYDL196W 330 nt1.43□□□□□ -2.18
MSH1P25846 EAF1YDR359C 2949 nt1.43□□□□□ -2.18
MSH1P25846 STB6YKL072W 2301 nt1.42□□□□□ -2.18
MSH1P25846 NUP157YER105C 4176 nt1.42□□□□□ -2.18
MSH1P25846 YLR342W-AYLR342W-A 174 nt1.41□□□□□ -2.18
MSH1P25846 YBR200W-AYBR200W-A 165 nt1.41□□□□□ -2.18
MSH1P25846 snR52snR52 92 nt1.41□□□□□ -2.18
MSH1P25846 YDL007C-AYDL007C-A 258 nt1.4□□□□□ -2.19
MSH1P25846 YDR354C-AYDR354C-A 144 nt1.4□□□□□ -2.19
MSH1P25846 CDC39YCR093W 6327 nt1.39□□□□□ -2.19
MSH1P25846 PMP1YCR024C-A 123 nt1.39□□□□□ -2.19
MSH1P25846 RSM22YKL155C 1887 nt1.39□□□□□ -2.19
MSH1P25846 LAA1YJL207C 6045 nt1.39□□□□□ -2.19
MSH1P25846 DOP1YDR141C 5097 nt1.38□□□□□ -2.19
MSH1P25846 RPL33BYOR234C 324 nt1.38□□□□□ -2.19
MSH1P25846 YIL134C-AYIL134C-A 204 nt1.37□□□□□ -2.19
MSH1P25846 WAR1YML076C 2835 nt1.37□□□□□ -2.19
MSH1P25846 Q0092Q0092 141 nt1.36□□□□□ -2.19
MSH1P25846 YIL020C-AYIL020C-A 339 nt1.36□□□□□ -2.19
MSH1P25846 COY1YKL179C 2040 nt1.35□□□□□ -2.19
MSH1P25846 KAP120YPL125W 3099 nt1.35□□□□□ -2.19
MSH1P25846 BEM2YER155C 6504 nt1.34□□□□□ -2.19
MSH1P25846 YJL026C-AYJL026C-A 222 nt1.34□□□□□ -2.19
MSH1P25846 YGR130CYGR130C 2451 nt1.34□□□□□ -2.2
MSH1P25846 SCC2YDR180W 4482 nt1.34□□□□□ -2.2
MSH1P25846 tH(GUG)E1tH(GUG)E1 72 nt1.33□□□□□ -2.2
MSH1P25846 tH(GUG)E2tH(GUG)E2 72 nt1.33□□□□□ -2.2
MSH1P25846 tH(GUG)G1tH(GUG)G1 72 nt1.33□□□□□ -2.2
MSH1P25846 tH(GUG)G2tH(GUG)G2 72 nt1.33□□□□□ -2.2
MSH1P25846 tH(GUG)HtH(GUG)H 72 nt1.33□□□□□ -2.2
MSH1P25846 tH(GUG)KtH(GUG)K 72 nt1.33□□□□□ -2.2
MSH1P25846 tH(GUG)MtH(GUG)M 72 nt1.33□□□□□ -2.2
MSH1P25846 RPS30BYOR182C 192 nt1.33□□□□□ -2.2
MSH1P25846 YBL053WYBL053W 375 nt1.32□□□□□ -2.2
MSH1P25846 RAD9YDR217C 3930 nt1.32□□□□□ -2.2
MSH1P25846 PAA1YDR071C 576 nt1.3□□□□□ -2.2
MSH1P25846 NST1YNL091W 3723 nt1.29□□□□□ -2.2
MSH1P25846 YCR038W-AYCR038W-A 126 nt1.29□□□□□ -2.2
MSH1P25846 YOR381W-AYOR381W-A 168 nt1.29□□□□□ -2.2
MSH1P25846 IML1YJR138W 4755 nt1.29□□□□□ -2.2
MSH1P25846 HAL9YOL089C 3093 nt1.28□□□□□ -2.2
MSH1P25846 ATP8Q0080 147 nt1.28□□□□□ -2.2
MSH1P25846 COX12YLR038C 252 nt1.28□□□□□ -2.2
MSH1P25846 NOP9YJL010C 2001 nt1.28□□□□□ -2.2
MSH1P25846 YEL073CYEL073C 324 nt1.27□□□□□ -2.21
MSH1P25846 CMC4YMR194C-B 222 nt1.27□□□□□ -2.21
MSH1P25846 YNL211CYNL211C 261 nt1.27□□□□□ -2.21
MSH1P25846 tV(UAC)BtV(UAC)B 74 nt1.26□□□□□ -2.21
MSH1P25846 tV(UAC)DtV(UAC)D 74 nt1.26□□□□□ -2.21
MSH1P25846 YAL067W-AYAL067W-A 228 nt1.26□□□□□ -2.21
MSH1P25846 YPL044CYPL044C 549 nt1.26□□□□□ -2.21
MSH1P25846 YPR117WYPR117W 7470 nt1.25□□□□□ -2.21
MSH1P25846 VAM6YDL077C 3150 nt1.25□□□□□ -2.21
MSH1P25846 SMC1YFL008W 3678 nt1.25□□□□□ -2.21
MSH1P25846 APL1YJR005W 2103 nt1.24□□□□□ -2.21
MSH1P25846 YOR170WYOR170W 306 nt1.23□□□□□ -2.21
MSH1P25846 GEA2YEL022W 4380 nt1.23□□□□□ -2.21
MSH1P25846 ASE1YOR058C 2658 nt1.22□□□□□ -2.21
MSH1P25846 TTI1YKL033W 3117 nt1.22□□□□□ -2.21
MSH1P25846 YER053C-AYER053C-A 114 nt1.21□□□□□ -2.22
Retrieved 100 of 7,029 protein–RNA pairs in 13.6 ms