Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGA1P17096 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGA1P17096 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.88■□□□□ 0.93
HMGA1P17096 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGA1P17096 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.88■□□□□ 0.93
HMGA1P17096 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGA1P17096 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGA1P17096 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGA1P17096 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGA1P17096 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.88■□□□□ 0.93
HMGA1P17096 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGA1P17096 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.88■□□□□ 0.93
HMGA1P17096 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HMGA1P17096 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGA1P17096 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
HMGA1P17096 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGA1P17096 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HMGA1P17096 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGA1P17096 AC092720.2-201ENST00000602388 1665 ntBASIC20.87■□□□□ 0.93
HMGA1P17096 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGA1P17096 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.87■□□□□ 0.93
HMGA1P17096 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGA1P17096 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
HMGA1P17096 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGA1P17096 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGA1P17096 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGA1P17096 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGA1P17096 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
HMGA1P17096 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGA1P17096 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGA1P17096 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGA1P17096 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
HMGA1P17096 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
HMGA1P17096 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
HMGA1P17096 HTR7P1-201ENST00000538670 1336 ntBASIC20.86■□□□□ 0.93
HMGA1P17096 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 AC007375.3-201ENST00000600936 2314 ntBASIC20.86■□□□□ 0.93
HMGA1P17096 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
HMGA1P17096 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.86■□□□□ 0.93
HMGA1P17096 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.86■□□□□ 0.93
HMGA1P17096 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.86■□□□□ 0.93
HMGA1P17096 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.86■□□□□ 0.93
HMGA1P17096 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.86■□□□□ 0.93
HMGA1P17096 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
HMGA1P17096 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGA1P17096 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.86■□□□□ 0.93
HMGA1P17096 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGA1P17096 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGA1P17096 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.85■□□□□ 0.93
HMGA1P17096 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.85■□□□□ 0.93
HMGA1P17096 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.85■□□□□ 0.93
HMGA1P17096 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.85■□□□□ 0.93
HMGA1P17096 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.85■□□□□ 0.93
HMGA1P17096 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGA1P17096 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
HMGA1P17096 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.85■□□□□ 0.93
HMGA1P17096 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
HMGA1P17096 AF186192.3-201ENST00000583427 947 ntBASIC20.85■□□□□ 0.93
HMGA1P17096 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.85■□□□□ 0.93
HMGA1P17096 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.85■□□□□ 0.93
HMGA1P17096 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGA1P17096 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGA1P17096 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.85■□□□□ 0.93
HMGA1P17096 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
HMGA1P17096 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGA1P17096 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGA1P17096 KRT17P2-201ENST00000300992 1314 ntBASIC20.84■□□□□ 0.93
HMGA1P17096 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
HMGA1P17096 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGA1P17096 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
HMGA1P17096 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGA1P17096 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
HMGA1P17096 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HMGA1P17096 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGA1P17096 TSPY15P-201ENST00000457163 923 ntBASIC20.84■□□□□ 0.93
HMGA1P17096 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HMGA1P17096 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGA1P17096 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGA1P17096 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.84■□□□□ 0.93
HMGA1P17096 AC073912.3-201ENST00000624414 853 ntBASIC20.84■□□□□ 0.93
HMGA1P17096 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGA1P17096 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGA1P17096 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGA1P17096 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
HMGA1P17096 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGA1P17096 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGA1P17096 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.83■□□□□ 0.93
HMGA1P17096 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HMGA1P17096 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.83■□□□□ 0.93
HMGA1P17096 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms