Protein–RNA interactions for Protein: P10747

CD28, T-cell-specific surface glycoprotein CD28, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD28P10747 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC15.68■□□□□ 0.1
CD28P10747 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC15.68■□□□□ 0.1
CD28P10747 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CD28P10747 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 AL049796.1-201ENST00000565336 1766 ntBASIC15.68■□□□□ 0.1
CD28P10747 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.68■□□□□ 0.1
CD28P10747 AC012618.2-201ENST00000428058 849 ntBASIC15.68■□□□□ 0.1
CD28P10747 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CD28P10747 GXYLT1P3-201ENST00000453058 1193 ntBASIC15.68■□□□□ 0.1
CD28P10747 AC233702.5-201ENST00000584107 538 ntBASIC15.68■□□□□ 0.1
CD28P10747 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC15.68■□□□□ 0.1
CD28P10747 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
CD28P10747 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC15.68■□□□□ 0.1
CD28P10747 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CD28P10747 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CD28P10747 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD28P10747 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC15.67■□□□□ 0.1
CD28P10747 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC15.67■□□□□ 0.1
CD28P10747 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CD28P10747 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC15.67■□□□□ 0.1
CD28P10747 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC15.67■□□□□ 0.1
CD28P10747 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
CD28P10747 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC15.67■□□□□ 0.1
CD28P10747 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD28P10747 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC15.67■□□□□ 0.1
CD28P10747 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC15.66■□□□□ 0.1
CD28P10747 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CD28P10747 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD28P10747 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD28P10747 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD28P10747 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD28P10747 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CD28P10747 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD28P10747 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC15.66■□□□□ 0.1
CD28P10747 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 AC073912.3-201ENST00000624414 853 ntBASIC15.66■□□□□ 0.1
CD28P10747 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.66■□□□□ 0.1
CD28P10747 AL049637.2-201ENST00000641778 930 ntBASIC15.66■□□□□ 0.1
CD28P10747 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 USP48-205ENST00000421625 2818 ntTSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 AC124283.5-201ENST00000624661 1809 ntBASIC15.66■□□□□ 0.1
CD28P10747 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC15.66■□□□□ 0.1
CD28P10747 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD28P10747 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CD28P10747 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 AC023632.3-201ENST00000521633 145 ntBASIC15.65■□□□□ 0.1
CD28P10747 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.65■□□□□ 0.1
CD28P10747 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.65■□□□□ 0.1
CD28P10747 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.65■□□□□ 0.1
CD28P10747 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CD28P10747 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms