Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC113410.3-201ENST00000623366 203 ntBASIC23.69■■□□□ 1.38
HLA-DOAP06340 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.69■■□□□ 1.38
HLA-DOAP06340 AC005229.4-201ENST00000610085 2198 ntBASIC23.69■■□□□ 1.38
HLA-DOAP06340 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
HLA-DOAP06340 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HLA-DOAP06340 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.69■■□□□ 1.38
HLA-DOAP06340 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DOAP06340 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DOAP06340 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DOAP06340 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DOAP06340 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DOAP06340 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DOAP06340 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 DHDH-203ENST00000522614 776 ntTSL 5 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 MIR4785-201ENST00000585005 73 ntBASIC23.68■■□□□ 1.38
HLA-DOAP06340 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.68■■□□□ 1.38
HLA-DOAP06340 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DOAP06340 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HLA-DOAP06340 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DOAP06340 DPP3P2-201ENST00000416030 1696 ntBASIC23.67■■□□□ 1.38
HLA-DOAP06340 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DOAP06340 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DOAP06340 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 AC004264.1-201ENST00000608354 794 ntBASIC23.67■■□□□ 1.38
HLA-DOAP06340 AC073912.3-201ENST00000624414 853 ntBASIC23.67■■□□□ 1.38
HLA-DOAP06340 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DOAP06340 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DOAP06340 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
HLA-DOAP06340 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DOAP06340 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HLA-DOAP06340 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC23.66■■□□□ 1.38
HLA-DOAP06340 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC23.66■■□□□ 1.38
HLA-DOAP06340 HTR7P1-201ENST00000538670 1336 ntBASIC23.66■■□□□ 1.38
HLA-DOAP06340 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 F2R-202ENST00000505600 442 ntTSL 2 BASIC23.66■■□□□ 1.38
HLA-DOAP06340 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.66■■□□□ 1.38
HLA-DOAP06340 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HLA-DOAP06340 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.65■■□□□ 1.38
HLA-DOAP06340 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HLA-DOAP06340 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC23.65■■□□□ 1.38
HLA-DOAP06340 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
HLA-DOAP06340 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.64■■□□□ 1.38
HLA-DOAP06340 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HLA-DOAP06340 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.37
HLA-DOAP06340 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
HLA-DOAP06340 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
HLA-DOAP06340 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.64■■□□□ 1.37
HLA-DOAP06340 AL353807.1-201ENST00000427475 662 ntBASIC23.64■■□□□ 1.37
HLA-DOAP06340 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC23.64■■□□□ 1.37
HLA-DOAP06340 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC23.64■■□□□ 1.37
HLA-DOAP06340 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HLA-DOAP06340 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC23.64■■□□□ 1.37
HLA-DOAP06340 AC092720.2-201ENST00000602388 1665 ntBASIC23.64■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms