Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.57■□□□□ 0.72
SIX3O95343 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.57■□□□□ 0.72
SIX3O95343 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 AC116562.4-201ENST00000641316 2276 ntBASIC19.57■□□□□ 0.72
SIX3O95343 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.57■□□□□ 0.72
SIX3O95343 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 MCRIP2P1-201ENST00000394346 511 ntBASIC19.57■□□□□ 0.72
SIX3O95343 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.57■□□□□ 0.72
SIX3O95343 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SIX3O95343 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.57■□□□□ 0.72
SIX3O95343 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SIX3O95343 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX3O95343 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.57■□□□□ 0.72
SIX3O95343 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.56■□□□□ 0.72
SIX3O95343 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.56■□□□□ 0.72
SIX3O95343 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.56■□□□□ 0.72
SIX3O95343 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 TMEM179-206ENST00000616017 1645 ntBASIC19.56■□□□□ 0.72
SIX3O95343 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SIX3O95343 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 AL162430.1-201ENST00000480705 870 ntBASIC19.56■□□□□ 0.72
SIX3O95343 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.56■□□□□ 0.72
SIX3O95343 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.56■□□□□ 0.72
SIX3O95343 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.56■□□□□ 0.72
SIX3O95343 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.56■□□□□ 0.72
SIX3O95343 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.56■□□□□ 0.72
SIX3O95343 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SIX3O95343 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SIX3O95343 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.56■□□□□ 0.72
SIX3O95343 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.56■□□□□ 0.72
SIX3O95343 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SIX3O95343 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX3O95343 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX3O95343 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.55■□□□□ 0.72
SIX3O95343 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SIX3O95343 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.55■□□□□ 0.72
SIX3O95343 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.55■□□□□ 0.72
SIX3O95343 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX3O95343 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SIX3O95343 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX3O95343 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.55■□□□□ 0.72
SIX3O95343 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.54■□□□□ 0.72
SIX3O95343 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.54■□□□□ 0.72
SIX3O95343 CYP2T1P-201ENST00000432607 1285 ntBASIC19.54■□□□□ 0.72
SIX3O95343 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.54■□□□□ 0.72
SIX3O95343 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.54■□□□□ 0.72
SIX3O95343 AC100791.3-201ENST00000617619 330 ntBASIC19.54■□□□□ 0.72
SIX3O95343 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX3O95343 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX3O95343 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.54■□□□□ 0.72
SIX3O95343 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX3O95343 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SIX3O95343 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX3O95343 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
SIX3O95343 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX3O95343 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.53■□□□□ 0.72
SIX3O95343 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX3O95343 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.53■□□□□ 0.72
SIX3O95343 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms