Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC34.57■■■■□ 3.12
CUX2O14529 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC34.57■■■■□ 3.12
CUX2O14529 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
CUX2O14529 SKP2-204ENST00000508514 821 ntTSL 3 BASIC34.57■■■■□ 3.12
CUX2O14529 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC34.57■■■■□ 3.12
CUX2O14529 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC34.57■■■■□ 3.12
CUX2O14529 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC34.57■■■■□ 3.12
CUX2O14529 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
CUX2O14529 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
CUX2O14529 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
CUX2O14529 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
CUX2O14529 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC34.56■■■■□ 3.12
CUX2O14529 AC116050.2-201ENST00000612102 1779 ntBASIC34.56■■■■□ 3.12
CUX2O14529 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC34.56■■■■□ 3.12
CUX2O14529 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC34.56■■■■□ 3.12
CUX2O14529 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC34.56■■■■□ 3.12
CUX2O14529 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC34.56■■■■□ 3.12
CUX2O14529 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
CUX2O14529 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC34.56■■■■□ 3.12
CUX2O14529 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC34.56■■■■□ 3.12
CUX2O14529 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
CUX2O14529 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC34.55■■■■□ 3.12
CUX2O14529 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC34.55■■■■□ 3.12
CUX2O14529 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC34.55■■■■□ 3.12
CUX2O14529 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
CUX2O14529 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC34.55■■■■□ 3.12
CUX2O14529 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
CUX2O14529 AC083849.1-201ENST00000615227 514 ntBASIC34.55■■■■□ 3.12
CUX2O14529 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
CUX2O14529 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC34.55■■■■□ 3.12
CUX2O14529 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC34.55■■■■□ 3.12
CUX2O14529 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC34.55■■■■□ 3.12
CUX2O14529 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC34.55■■■■□ 3.12
CUX2O14529 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC34.55■■■■□ 3.12
CUX2O14529 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
CUX2O14529 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC34.54■■■■□ 3.12
CUX2O14529 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
CUX2O14529 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC34.54■■■■□ 3.12
CUX2O14529 PPP1R14BP5-201ENST00000440334 435 ntBASIC34.54■■■■□ 3.12
CUX2O14529 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC34.54■■■■□ 3.12
CUX2O14529 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC34.54■■■■□ 3.12
CUX2O14529 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC34.54■■■■□ 3.12
CUX2O14529 AL356652.1-201ENST00000615962 565 ntBASIC34.54■■■■□ 3.12
CUX2O14529 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC34.53■■■■□ 3.12
CUX2O14529 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
CUX2O14529 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC34.53■■■■□ 3.12
CUX2O14529 STX5-203ENST00000394690 1568 ntTSL 5 BASIC34.53■■■■□ 3.12
CUX2O14529 PNN-205ENST00000556530 601 ntTSL 2 BASIC34.53■■■■□ 3.12
CUX2O14529 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC34.53■■■■□ 3.12
CUX2O14529 ABBA01031674.1-201ENST00000635145 728 ntBASIC34.53■■■■□ 3.12
CUX2O14529 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
CUX2O14529 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
CUX2O14529 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC34.53■■■■□ 3.12
CUX2O14529 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CUX2O14529 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CUX2O14529 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC34.53■■■■□ 3.12
CUX2O14529 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC34.52■■■■□ 3.12
CUX2O14529 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
CUX2O14529 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC34.52■■■■□ 3.12
CUX2O14529 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
CUX2O14529 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC34.52■■■■□ 3.12
CUX2O14529 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC34.52■■■■□ 3.12
CUX2O14529 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
CUX2O14529 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC34.52■■■■□ 3.12
CUX2O14529 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC34.51■■■■□ 3.11
CUX2O14529 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.11
CUX2O14529 AC097488.1-201ENST00000507834 756 ntBASIC34.51■■■■□ 3.11
CUX2O14529 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC34.5■■■■□ 3.11
CUX2O14529 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
CUX2O14529 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC34.5■■■■□ 3.11
CUX2O14529 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC34.5■■■■□ 3.11
CUX2O14529 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC34.5■■■■□ 3.11
CUX2O14529 BCL10-202ENST00000620248 774 ntTSL 5 BASIC34.5■■■■□ 3.11
CUX2O14529 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC34.5■■■■□ 3.11
CUX2O14529 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC34.5■■■■□ 3.11
CUX2O14529 FAM99A-202ENST00000538190 1989 ntBASIC34.5■■■■□ 3.11
CUX2O14529 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
CUX2O14529 AC127496.7-201ENST00000625110 1798 ntBASIC34.49■■■■□ 3.11
CUX2O14529 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
CUX2O14529 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC34.49■■■■□ 3.11
CUX2O14529 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
CUX2O14529 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
CUX2O14529 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
CUX2O14529 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
CUX2O14529 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
CUX2O14529 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
CUX2O14529 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
CUX2O14529 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC34.48■■■■□ 3.11
CUX2O14529 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC34.48■■■■□ 3.11
CUX2O14529 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC34.48■■■■□ 3.11
CUX2O14529 CKBP1-201ENST00000565489 1086 ntBASIC34.48■■■■□ 3.11
CUX2O14529 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC34.48■■■■□ 3.11
CUX2O14529 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
CUX2O14529 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC34.47■■■■□ 3.11
CUX2O14529 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
CUX2O14529 FXN-203ENST00000396366 922 ntTSL 2 BASIC34.47■■■■□ 3.11
CUX2O14529 AC092183.1-201ENST00000469884 875 ntBASIC34.47■■■■□ 3.11
CUX2O14529 MIR3652-201ENST00000579335 131 ntBASIC34.47■■■■□ 3.11
CUX2O14529 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC34.47■■■■□ 3.11
CUX2O14529 AC010653.2-201ENST00000623505 997 ntBASIC34.47■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms