Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CBX4O00257 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.47■□□□□ 0.87
CBX4O00257 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CBX4O00257 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.47■□□□□ 0.87
CBX4O00257 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CBX4O00257 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.47■□□□□ 0.87
CBX4O00257 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.47■□□□□ 0.87
CBX4O00257 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CBX4O00257 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.47■□□□□ 0.87
CBX4O00257 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.47■□□□□ 0.87
CBX4O00257 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CBX4O00257 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CBX4O00257 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.47■□□□□ 0.87
CBX4O00257 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CBX4O00257 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CBX4O00257 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CBX4O00257 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CBX4O00257 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.46■□□□□ 0.87
CBX4O00257 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CBX4O00257 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.46■□□□□ 0.87
CBX4O00257 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CBX4O00257 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.46■□□□□ 0.87
CBX4O00257 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.46■□□□□ 0.87
CBX4O00257 AC142381.4-202ENST00000563973 229 ntBASIC20.46■□□□□ 0.87
CBX4O00257 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.46■□□□□ 0.87
CBX4O00257 AL031963.3-201ENST00000606441 850 ntBASIC20.46■□□□□ 0.87
CBX4O00257 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 AP005212.1-201ENST00000581547 1997 ntBASIC20.46■□□□□ 0.87
CBX4O00257 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
CBX4O00257 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.46■□□□□ 0.87
CBX4O00257 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.46■□□□□ 0.87
CBX4O00257 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CBX4O00257 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.45■□□□□ 0.87
CBX4O00257 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 KRT8P17-201ENST00000453110 1448 ntBASIC20.45■□□□□ 0.86
CBX4O00257 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.45■□□□□ 0.86
CBX4O00257 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.45■□□□□ 0.86
CBX4O00257 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CBX4O00257 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CBX4O00257 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 AL596275.1-201ENST00000423464 877 ntBASIC20.45■□□□□ 0.86
CBX4O00257 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.45■□□□□ 0.86
CBX4O00257 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.45■□□□□ 0.86
CBX4O00257 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.45■□□□□ 0.86
CBX4O00257 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.45■□□□□ 0.86
CBX4O00257 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CBX4O00257 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CBX4O00257 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CBX4O00257 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CBX4O00257 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CBX4O00257 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.44■□□□□ 0.86
CBX4O00257 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.44■□□□□ 0.86
CBX4O00257 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CBX4O00257 KRT17P3-201ENST00000420566 1262 ntBASIC20.44■□□□□ 0.86
CBX4O00257 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CBX4O00257 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.44■□□□□ 0.86
CBX4O00257 AC120498.8-201ENST00000614275 531 ntBASIC20.44■□□□□ 0.86
CBX4O00257 AC073648.6-201ENST00000641589 218 ntBASIC20.44■□□□□ 0.86
CBX4O00257 AC092667.1-201ENST00000434301 2586 ntBASIC20.44■□□□□ 0.86
CBX4O00257 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CBX4O00257 AL157384.1-201ENST00000445995 2473 ntBASIC20.44■□□□□ 0.86
CBX4O00257 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CBX4O00257 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CBX4O00257 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.43■□□□□ 0.86
CBX4O00257 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CBX4O00257 POM121L13P-201ENST00000422362 380 ntBASIC20.43■□□□□ 0.86
CBX4O00257 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms