Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 AC006011.2-201ENST00000621313 1158 ntBASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 MESTP1-201ENST00000404287 994 ntBASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 BX664615.1-201ENST00000443558 458 ntBASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 WWOX-216ENST00000569818 525 ntBASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CCDC163A0A0D9SF12 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC163A0A0D9SF12 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 AC091076.1-201ENST00000610741 619 ntBASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC163A0A0D9SF12 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 B3GAT3P1-201ENST00000471720 806 ntBASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC163A0A0D9SF12 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 AP006587.1-201ENST00000534129 1502 ntBASIC19.86■□□□□ 0.77
CCDC163A0A0D9SF12 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms