Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 PGM5P4-201ENST00000421970 445 ntBASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TRAV3A0A0B4J244 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.1■□□□□ 0.17
TRAV3A0A0B4J244 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 AC137761.2-201ENST00000561729 223 ntBASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 AC145350.3-201ENST00000569033 163 ntBASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 MIR6821-201ENST00000617625 74 ntBASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV3A0A0B4J244 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV3A0A0B4J244 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV3A0A0B4J244 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV3A0A0B4J244 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV3A0A0B4J244 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV3A0A0B4J244 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.08■□□□□ 0.17
TRAV3A0A0B4J244 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 PBX1-209ENST00000485769 834 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 AC007322.4-201ENST00000509611 723 ntBASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 MFSD11-216ENST00000590393 1141 ntBASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 AC013268.1-206ENST00000638368 961 ntBASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 AC112229.1-201ENST00000639295 961 ntBASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms