Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MRPL45P2-203ENST00000573318 473 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 AC090371.1-201ENST00000580071 558 ntTSL 4 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 AC090699.1-201ENST00000586264 321 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 DTNA-220ENST00000590831 847 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 ZNF525-206ENST00000593918 590 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 DARS-AS1-213ENST00000596410 741 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 AL049829.3-202ENST00000604278 711 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 AC008626.1-201ENST00000604384 255 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 AL391903.2-201ENST00000614532 247 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 RN7SL820P-201ENST00000616437 299 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 AC233702.2-201ENST00000618784 583 ntTSL 4 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 CCL4L2-216ENST00000620098 836 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 MED15P6-202ENST00000621415 787 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 NSRP1-217ENST00000612959 2420 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 SORBS1-208ENST00000371241 2055 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 PACRG-202ENST00000366888 1373 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 ALG8-221ENST00000615266 1469 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 UEVLD-205ENST00000396197 4156 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 AC027313.1-201ENST00000509159 1666 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 LDHA-204ENST00000396222 1766 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 OAT-208ENST00000539214 1864 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 ABI1-206ENST00000376140 1446 ntTSL 5 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC092979.1-201ENST00000488190 1414 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 FER-209ENST00000618353 1420 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 THAP12P3-201ENST00000456373 2266 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 PDXDC1-201ENST00000325823 1113 ntTSL 5 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 PHACTR1-204ENST00000379348 795 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 AL139327.1-201ENST00000382988 348 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 SNORA70G-201ENST00000383923 142 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 PKMP3-201ENST00000405497 715 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 VN1R13P-201ENST00000406212 885 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 GAS8-AS1-201ENST00000408886 435 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AL008626.1-201ENST00000412357 775 ntTSL 2 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 CTSLP8-201ENST00000413075 967 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC011753.4-201ENST00000417974 311 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AL022100.1-202ENST00000421214 548 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 METTL8P1-201ENST00000428182 611 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AL590682.1-201ENST00000437248 344 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC005040.1-201ENST00000437783 482 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 MRPL22-202ENST00000439747 784 ntTSL 2 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 EFCAB14P1-201ENST00000442409 463 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AL590004.3-201ENST00000450255 443 ntTSL 5 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC018816.1-206ENST00000474544 455 ntTSL 3 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC026254.1-201ENST00000479473 431 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 RN7SL89P-201ENST00000480252 283 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC025180.1-201ENST00000505701 595 ntTSL 4 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 LINC00499-203ENST00000510736 587 ntTSL 5 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 ANKRD55-205ENST00000513241 626 ntTSL 5 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC107959.3-202ENST00000523806 450 ntTSL 5 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 AP005597.2-201ENST00000526238 341 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 TMEM132D-AS1-204ENST00000537367 531 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC009118.1-201ENST00000566019 374 ntTSL 2 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC138749.2-201ENST00000566048 167 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 DSG1-AS1-204ENST00000581856 669 ntTSL 3 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 RN7SL178P-201ENST00000582930 304 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 Z98949.1-208ENST00000597614 816 ntTSL 5 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC093063.1-201ENST00000599317 363 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 RN7SL760P-201ENST00000607344 270 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AL451054.3-201ENST00000611115 776 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC012488.1-201ENST00000611221 640 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AC103974.2-201ENST00000611319 778 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 AL451054.1-201ENST00000621770 772 ntBASIC6.51□□□□□ -1.37
NKX3-1Q99801 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 CXCR4-202ENST00000409817 1895 ntAPPRIS P3 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC6.51□□□□□ -1.37
NKX3-1Q99801 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
NKX3-1Q99801 METTL18-202ENST00000310392 1521 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AL589993.1-201ENST00000407450 2524 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 RMST-210ENST00000640149 2844 ntTSL 5 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms