RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 DCAF8L2P0C7V8 631 aa11.81□□□□□ -0.52
SYNE2-216ENST00000555002 PELP1Q8IZL8 1130 aaKnown RBP11.17□□□□□ -0.62
SYNE2-216ENST00000555002 EHMT2Q96KQ7 1210 aa11.17□□□□□ -0.62
SYNE2-216ENST00000555002 SUPT5HO00267 1087 aaKnown RBP10.97□□□□□ -0.65
SYNE2-216ENST00000555002 ERICH6Q7L0X2 663 aa10.87□□□□□ -0.67
SYNE2-216ENST00000555002 APLP2Q06481 763 aa10.81□□□□□ -0.68
SYNE2-216ENST00000555002 TTBK1Q5TCY1 1321 aaPredicted RBP10.81□□□□□ -0.68
SYNE2-216ENST00000555002 SHROOM4Q9ULL8 1493 aa10.73□□□□□ -0.69
SYNE2-216ENST00000555002 FAM9AQ8IZU1 332 aaPredicted RBP10.72□□□□□ -0.69
SYNE2-216ENST00000555002 CCER1Q8TC90 406 aaPredicted RBP10.64□□□□□ -0.71
SYNE2-216ENST00000555002 RANGAP1P46060 587 aaPredicted RBP10.63□□□□□ -0.71
SYNE2-216ENST00000555002 MYT1Q01538 1121 aa10.62□□□□□ -0.71
SYNE2-216ENST00000555002 ATP1B4Q9UN42 357 aaPredicted RBP10.55□□□□□ -0.72
SYNE2-216ENST00000555002 PCGF6Q9BYE7 350 aa10.49□□□□□ -0.73
SYNE2-216ENST00000555002 NEFLP07196 543 aa10.45□□□□□ -0.74
SYNE2-216ENST00000555002 CENPBP07199 599 aaPredicted RBP10.41□□□□□ -0.74
SYNE2-216ENST00000555002 YTHDC1Q96MU7 727 aaKnown RBP10.4□□□□□ -0.74
SYNE2-216ENST00000555002 DAXXQ9UER7 740 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-216ENST00000555002 MYT1LQ9UL68 1186 aa10.33□□□□□ -0.76
SYNE2-216ENST00000555002 CHIC1Q5VXU3 224 aa10.32□□□□□ -0.76
SYNE2-216ENST00000555002 POLR3GLQ9BT43 218 aa10.31□□□□□ -0.76
SYNE2-216ENST00000555002 CNGB1Q14028 1251 aaPredicted RBP10.22□□□□□ -0.77
SYNE2-216ENST00000555002 SLC4A1APQ9BWU0 796 aaKnown RBP10.21□□□□□ -0.77
SYNE2-216ENST00000555002 UBTFP17480 764 aaKnown RBP10.18□□□□□ -0.78
SYNE2-216ENST00000555002 ZNF316A6NFI3 1004 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-216ENST00000555002 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-216ENST00000555002 HNRNPUL2Q1KMD3 747 aaKnown RBP10.1□□□□□ -0.79
SYNE2-216ENST00000555002 ZEB1P37275 1124 aaPredicted RBP10.09□□□□□ -0.79
SYNE2-216ENST00000555002 PPARGC1BQ86YN6 1023 aaKnown RBP10.08□□□□□ -0.8
SYNE2-216ENST00000555002 CLSPNQ9HAW4 1339 aa10.07□□□□□ -0.8
SYNE2-216ENST00000555002 ITGAEP38570 1179 aa10.05□□□□□ -0.8
SYNE2-216ENST00000555002 TRIM41Q8WV44 630 aa10.03□□□□□ -0.8
SYNE2-216ENST00000555002 BCL11AQ9H165 835 aa10□□□□□ -0.81
SYNE2-216ENST00000555002 RTL5Q5HYW3 569 aaPredicted RBP9.99□□□□□ -0.81
SYNE2-216ENST00000555002 SLC24A1O60721 1099 aa9.95□□□□□ -0.82
SYNE2-216ENST00000555002 NISCHQ9Y2I1 1504 aa9.89□□□□□ -0.83
SYNE2-216ENST00000555002 ZBTB47Q9UFB7 747 aaPredicted RBP9.87□□□□□ -0.83
SYNE2-216ENST00000555002 BCANQ96GW7 911 aa9.79□□□□□ -0.84
SYNE2-216ENST00000555002 CANXP27824 592 aaKnown RBP9.77□□□□□ -0.84
SYNE2-216ENST00000555002 ZNF326Q5BKZ1 582 aaKnown RBP9.74□□□□□ -0.85
SYNE2-216ENST00000555002 PLPPR3Q6T4P5 718 aa9.68□□□□□ -0.86
SYNE2-216ENST00000555002 TRIM52Q96A61 297 aa9.68□□□□□ -0.86
SYNE2-216ENST00000555002 FAM50AQ14320 339 aaKnown RBP9.67□□□□□ -0.86
SYNE2-216ENST00000555002 HRCP23327 699 aa9.63□□□□□ -0.87
SYNE2-216ENST00000555002 NEUROD1Q13562 356 aa9.63□□□□□ -0.87
SYNE2-216ENST00000555002 NEFMP07197 916 aa9.61□□□□□ -0.87
SYNE2-216ENST00000555002 TRIM26Q12899 539 aaPredicted RBP9.59□□□□□ -0.87
SYNE2-216ENST00000555002 A0A0G2JS52 829 aa9.59□□□□□ -0.87
SYNE2-216ENST00000555002 NPM2Q86SE8 214 aaKnown RBP9.59□□□□□ -0.87
SYNE2-216ENST00000555002 CDK11AQ9UQ88 783 aaPredicted RBP9.56□□□□□ -0.88
SYNE2-216ENST00000555002 HSP90AA1P07900 732 aaKnown RBP9.56□□□□□ -0.88
SYNE2-216ENST00000555002 EIF5BO60841 1220 aaKnown RBP9.55□□□□□ -0.88
SYNE2-216ENST00000555002 ANP32BQ92688 251 aaKnown RBP9.54□□□□□ -0.88
SYNE2-216ENST00000555002 CDK11BP21127 795 aaKnown RBP9.53□□□□□ -0.88
SYNE2-216ENST00000555002 FBLN2P98095 1184 aa9.52□□□□□ -0.89
SYNE2-216ENST00000555002 ANP32CO43423 234 aa9.5□□□□□ -0.89
SYNE2-216ENST00000555002 SCAF1Q9H7N4 1312 aaKnown RBP9.5□□□□□ -0.89
SYNE2-216ENST00000555002 DIEXFQ68CQ4 756 aaKnown RBP9.49□□□□□ -0.89
SYNE2-216ENST00000555002 TULP1O00294 542 aaPredicted RBP9.49□□□□□ -0.89
SYNE2-216ENST00000555002 ARXQ96QS3 562 aa9.49□□□□□ -0.89
SYNE2-216ENST00000555002 ARID3CA6NKF2 412 aa9.49□□□□□ -0.89
SYNE2-216ENST00000555002 ESF1Q9H501 851 aaKnown RBP9.49□□□□□ -0.89
SYNE2-216ENST00000555002 ANP32AP39687 249 aaKnown RBP9.48□□□□□ -0.89
SYNE2-216ENST00000555002 PLEKHG5O94827 1062 aa9.46□□□□□ -0.9
SYNE2-216ENST00000555002 STAG3Q9UJ98 1225 aa9.45□□□□□ -0.9
SYNE2-216ENST00000555002 LOC105371045A0A1W2PR82 267 aa9.44□□□□□ -0.9
SYNE2-216ENST00000555002 CHGAP10645 457 aaKnown RBP9.4□□□□□ -0.9
SYNE2-216ENST00000555002 ZBTB7CA1YPR0 619 aa9.39□□□□□ -0.91
SYNE2-216ENST00000555002 NCBP3Q53F19 620 aaKnown RBP9.39□□□□□ -0.91
SYNE2-216ENST00000555002 ZNF777Q9ULD5 760 aaPredicted RBP9.36□□□□□ -0.91
SYNE2-216ENST00000555002 SENP3Q9H4L4 574 aaPredicted RBP9.36□□□□□ -0.91
SYNE2-216ENST00000555002 UPF2Q9HAU5 1272 aaKnown RBP9.35□□□□□ -0.91
SYNE2-216ENST00000555002 GTF3C3Q9Y5Q9 886 aa9.35□□□□□ -0.91
SYNE2-216ENST00000555002 GLIPR1L2Q4G1C9 344 aa9.33□□□□□ -0.92
SYNE2-216ENST00000555002 TPRNQ4KMQ1 711 aa9.31□□□□□ -0.92
SYNE2-216ENST00000555002 C14orf37Q86TY3 774 aa9.31□□□□□ -0.92
SYNE2-216ENST00000555002 NBR1Q14596 966 aa9.31□□□□□ -0.92
SYNE2-216ENST00000555002 SALL2Q9Y467 1007 aaPredicted RBP9.29□□□□□ -0.92
SYNE2-216ENST00000555002 P3H3Q8IVL6 736 aa9.28□□□□□ -0.92
SYNE2-216ENST00000555002 TAOK2Q9UL54 1235 aa9.27□□□□□ -0.92
SYNE2-216ENST00000555002 MYH16Q9H6N6 1097 aa9.26□□□□□ -0.93
SYNE2-216ENST00000555002 CLSTN1O94985 981 aa9.25□□□□□ -0.93
SYNE2-216ENST00000555002 PABPN1Q86U42 306 aaKnown RBP eCLIP9.23□□□□□ -0.93
SYNE2-216ENST00000555002 HAP1P54257 671 aaPredicted RBP9.22□□□□□ -0.93
SYNE2-216ENST00000555002 NPHP1O15259 732 aa9.21□□□□□ -0.93
SYNE2-216ENST00000555002 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.21□□□□□ -0.93
SYNE2-216ENST00000555002 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.21□□□□□ -0.93
SYNE2-216ENST00000555002 FAM9BQ8IZU0 186 aa9.2□□□□□ -0.94
SYNE2-216ENST00000555002 NCLP19338 710 aaKnown RBP9.19□□□□□ -0.94
SYNE2-216ENST00000555002 ZRSR1Q15695 479 aaKnown RBP9.19□□□□□ -0.94
SYNE2-216ENST00000555002 PTMAP06454 111 aaKnown RBP9.18□□□□□ -0.94
SYNE2-216ENST00000555002 FKBP8Q14318 412 aa9.18□□□□□ -0.94
SYNE2-216ENST00000555002 WDR43Q15061 677 aaKnown RBP eCLIP9.15□□□□□ -0.94
SYNE2-216ENST00000555002 PRM3Q9NNZ6 103 aa9.15□□□□□ -0.94
SYNE2-216ENST00000555002 CCDC136Q96JN2 1154 aa9.15□□□□□ -0.95
SYNE2-216ENST00000555002 HNRNPUQ00839 825 aaKnown RBP eCLIP9.14□□□□□ -0.95
SYNE2-216ENST00000555002 NPM1P06748 294 aaKnown RBP eCLIP9.14□□□□□ -0.95
SYNE2-216ENST00000555002 TNNT2P45379 298 aaPredicted RBP9.14□□□□□ -0.95
SYNE2-216ENST00000555002 PPP1R15AO75807 674 aaPredicted RBP9.14□□□□□ -0.95
SYNE2-216ENST00000555002 TRIM44Q96DX7 344 aaPredicted RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms