Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CISHQ9NSE2 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CISHQ9NSE2 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.43■■□□□ 1.02
CISHQ9NSE2 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CISHQ9NSE2 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CISHQ9NSE2 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.43■■□□□ 1.02
CISHQ9NSE2 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.43■■□□□ 1.02
CISHQ9NSE2 HLA-B-256ENST00000639848 1089 ntBASIC21.43■■□□□ 1.02
CISHQ9NSE2 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CISHQ9NSE2 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CISHQ9NSE2 KRT8P20-201ENST00000423953 1409 ntBASIC21.43■■□□□ 1.02
CISHQ9NSE2 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
CISHQ9NSE2 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CISHQ9NSE2 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
CISHQ9NSE2 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.43■■□□□ 1.02
CISHQ9NSE2 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CISHQ9NSE2 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CISHQ9NSE2 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CISHQ9NSE2 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CISHQ9NSE2 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CISHQ9NSE2 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CISHQ9NSE2 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.42■■□□□ 1.02
CISHQ9NSE2 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CISHQ9NSE2 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.42■■□□□ 1.02
CISHQ9NSE2 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CISHQ9NSE2 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.42■■□□□ 1.02
CISHQ9NSE2 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CISHQ9NSE2 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.42■■□□□ 1.02
CISHQ9NSE2 BX119927.1-201ENST00000636596 1552 ntBASIC21.42■■□□□ 1.02
CISHQ9NSE2 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.42■■□□□ 1.02
CISHQ9NSE2 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.42■■□□□ 1.02
CISHQ9NSE2 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CISHQ9NSE2 AC073130.3-201ENST00000624389 2278 ntBASIC21.41■■□□□ 1.02
CISHQ9NSE2 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 HLA-G-202ENST00000376815 851 ntBASIC21.41■■□□□ 1.02
CISHQ9NSE2 HLA-G-203ENST00000376818 1127 ntBASIC21.41■■□□□ 1.02
CISHQ9NSE2 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 AC060766.5-201ENST00000590539 871 ntBASIC21.41■■□□□ 1.02
CISHQ9NSE2 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CISHQ9NSE2 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CISHQ9NSE2 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 AC112907.3-201ENST00000577781 2400 ntBASIC21.4■■□□□ 1.02
CISHQ9NSE2 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CISHQ9NSE2 AC092368.3-202ENST00000574180 1591 ntBASIC21.4■■□□□ 1.02
CISHQ9NSE2 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.4■■□□□ 1.02
CISHQ9NSE2 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
CISHQ9NSE2 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.4■■□□□ 1.02
CISHQ9NSE2 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CISHQ9NSE2 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.4■■□□□ 1.02
CISHQ9NSE2 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.4■■□□□ 1.02
CISHQ9NSE2 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 AC005829.2-201ENST00000571422 1056 ntBASIC21.4■■□□□ 1.02
CISHQ9NSE2 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
CISHQ9NSE2 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.4■■□□□ 1.02
CISHQ9NSE2 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CISHQ9NSE2 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CISHQ9NSE2 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
CISHQ9NSE2 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.39■■□□□ 1.02
CISHQ9NSE2 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CISHQ9NSE2 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CISHQ9NSE2 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CISHQ9NSE2 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CISHQ9NSE2 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CISHQ9NSE2 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CISHQ9NSE2 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CISHQ9NSE2 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CISHQ9NSE2 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CISHQ9NSE2 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.39■■□□□ 1.01
CISHQ9NSE2 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.39■■□□□ 1.01
CISHQ9NSE2 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.39■■□□□ 1.01
CISHQ9NSE2 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.39■■□□□ 1.01
CISHQ9NSE2 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CISHQ9NSE2 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms