Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 CKBP1-201ENST00000565489 1086 ntBASIC17.68■□□□□ 0.42
COL12A1Q99715 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.68■□□□□ 0.42
COL12A1Q99715 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.68■□□□□ 0.42
COL12A1Q99715 CR392000.1-201ENST00000624770 1228 ntBASIC17.68■□□□□ 0.42
COL12A1Q99715 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL12A1Q99715 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL12A1Q99715 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL12A1Q99715 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL12A1Q99715 PGM5P4-201ENST00000421970 445 ntBASIC17.67■□□□□ 0.42
COL12A1Q99715 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.67■□□□□ 0.42
COL12A1Q99715 AC008622.2-201ENST00000617006 1229 ntBASIC17.67■□□□□ 0.42
COL12A1Q99715 AL138966.2-201ENST00000621997 464 ntBASIC17.67■□□□□ 0.42
COL12A1Q99715 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
COL12A1Q99715 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.67■□□□□ 0.42
COL12A1Q99715 NIFKP9-201ENST00000419265 221 ntBASIC17.67■□□□□ 0.42
COL12A1Q99715 AC009078.2-202ENST00000463353 338 ntBASIC17.67■□□□□ 0.42
COL12A1Q99715 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.67■□□□□ 0.42
COL12A1Q99715 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL12A1Q99715 AC012313.10-201ENST00000623509 926 ntBASIC17.67■□□□□ 0.42
COL12A1Q99715 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.67■□□□□ 0.42
COL12A1Q99715 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL12A1Q99715 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL12A1Q99715 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.66■□□□□ 0.42
COL12A1Q99715 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.66■□□□□ 0.42
COL12A1Q99715 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL12A1Q99715 AL022342.1-201ENST00000400363 863 ntBASIC17.66■□□□□ 0.42
COL12A1Q99715 HMGN1P19-201ENST00000436976 333 ntBASIC17.66■□□□□ 0.42
COL12A1Q99715 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.66■□□□□ 0.42
COL12A1Q99715 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.66■□□□□ 0.42
COL12A1Q99715 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.65■□□□□ 0.42
COL12A1Q99715 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL12A1Q99715 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COL12A1Q99715 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
COL12A1Q99715 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.65■□□□□ 0.42
COL12A1Q99715 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
COL12A1Q99715 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.65■□□□□ 0.42
COL12A1Q99715 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL12A1Q99715 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.65■□□□□ 0.42
COL12A1Q99715 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.65■□□□□ 0.42
COL12A1Q99715 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.65■□□□□ 0.42
COL12A1Q99715 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.65■□□□□ 0.42
COL12A1Q99715 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.65■□□□□ 0.42
COL12A1Q99715 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL12A1Q99715 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL12A1Q99715 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL12A1Q99715 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL12A1Q99715 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.65■□□□□ 0.42
COL12A1Q99715 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL12A1Q99715 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL12A1Q99715 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.65■□□□□ 0.42
COL12A1Q99715 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
COL12A1Q99715 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.65■□□□□ 0.42
COL12A1Q99715 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL12A1Q99715 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL12A1Q99715 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL12A1Q99715 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
COL12A1Q99715 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.42
COL12A1Q99715 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.64■□□□□ 0.42
COL12A1Q99715 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.64■□□□□ 0.41
COL12A1Q99715 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.64■□□□□ 0.41
COL12A1Q99715 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.64■□□□□ 0.41
COL12A1Q99715 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
COL12A1Q99715 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL12A1Q99715 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.64■□□□□ 0.41
COL12A1Q99715 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
COL12A1Q99715 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL12A1Q99715 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
COL12A1Q99715 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL12A1Q99715 AL390719.1-204ENST00000412397 1219 ntBASIC17.63■□□□□ 0.41
COL12A1Q99715 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.63■□□□□ 0.41
COL12A1Q99715 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL12A1Q99715 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC17.63■□□□□ 0.41
COL12A1Q99715 AP002982.1-201ENST00000492365 877 ntBASIC17.63■□□□□ 0.41
COL12A1Q99715 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.63■□□□□ 0.41
COL12A1Q99715 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms