Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LINC00477Q96M19 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
LINC00477Q96M19 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 AC087633.2-202ENST00000565166 1439 ntBASIC15.01□□□□□ -0.01
LINC00477Q96M19 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 TERF1P5-201ENST00000477545 1207 ntBASIC15.01□□□□□ -0.01
LINC00477Q96M19 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 AL162412.1-201ENST00000567129 965 ntBASIC15.01□□□□□ -0.01
LINC00477Q96M19 AC007952.6-201ENST00000573168 2673 ntBASIC15.01□□□□□ -0.01
LINC00477Q96M19 AC003957.1-201ENST00000625108 2673 ntBASIC15.01□□□□□ -0.01
LINC00477Q96M19 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.01□□□□□ -0.01
LINC00477Q96M19 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LINC00477Q96M19 LBX2-AS1-202ENST00000603175 2083 ntBASIC15.01□□□□□ -0.01
LINC00477Q96M19 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
LINC00477Q96M19 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
LINC00477Q96M19 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15□□□□□ -0.01
LINC00477Q96M19 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC15□□□□□ -0.01
LINC00477Q96M19 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
LINC00477Q96M19 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
LINC00477Q96M19 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 LGR4-203ENST00000480977 492 ntTSL 2 BASIC15□□□□□ -0.01
LINC00477Q96M19 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC15□□□□□ -0.01
LINC00477Q96M19 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC15□□□□□ -0.01
LINC00477Q96M19 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
LINC00477Q96M19 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC15□□□□□ -0.01
LINC00477Q96M19 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15□□□□□ -0.01
LINC00477Q96M19 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
LINC00477Q96M19 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
LINC00477Q96M19 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
LINC00477Q96M19 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC15□□□□□ -0.01
LINC00477Q96M19 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
LINC00477Q96M19 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC14.99□□□□□ -0.01
LINC00477Q96M19 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC14.99□□□□□ -0.01
LINC00477Q96M19 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC14.99□□□□□ -0.01
LINC00477Q96M19 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC14.99□□□□□ -0.01
LINC00477Q96M19 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 KRT18P11-201ENST00000435214 1283 ntBASIC14.99□□□□□ -0.01
LINC00477Q96M19 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
LINC00477Q96M19 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
LINC00477Q96M19 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LINC00477Q96M19 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms