Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP3Q96DZ5 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 AL049796.1-201ENST00000565336 1766 ntBASIC19.29■□□□□ 0.68
CLIP3Q96DZ5 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CLIP3Q96DZ5 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.27■□□□□ 0.68
CLIP3Q96DZ5 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLIP3Q96DZ5 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.27■□□□□ 0.67
CLIP3Q96DZ5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CLIP3Q96DZ5 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLIP3Q96DZ5 AC007952.6-201ENST00000573168 2673 ntBASIC19.27■□□□□ 0.67
CLIP3Q96DZ5 AC003957.1-201ENST00000625108 2673 ntBASIC19.27■□□□□ 0.67
CLIP3Q96DZ5 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
CLIP3Q96DZ5 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLIP3Q96DZ5 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CLIP3Q96DZ5 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 AL390719.1-204ENST00000412397 1219 ntBASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 FAM197Y4-202ENST00000622692 608 ntBASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms