Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS33AQ96AX1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS33AQ96AX1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS33AQ96AX1 RBM17P2-201ENST00000616397 1405 ntBASIC19.25■□□□□ 0.67
VPS33AQ96AX1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS33AQ96AX1 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS33AQ96AX1 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS33AQ96AX1 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 AC007322.3-201ENST00000426526 701 ntBASIC19.24■□□□□ 0.67
VPS33AQ96AX1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 AC005837.3-201ENST00000612163 286 ntBASIC19.24■□□□□ 0.67
VPS33AQ96AX1 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS33AQ96AX1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 AC018445.3-201ENST00000624177 1945 ntBASIC19.23■□□□□ 0.67
VPS33AQ96AX1 BX119927.1-201ENST00000636596 1552 ntBASIC19.23■□□□□ 0.67
VPS33AQ96AX1 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS33AQ96AX1 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 KRT18P20-201ENST00000548986 1279 ntBASIC19.22■□□□□ 0.67
VPS33AQ96AX1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 AC243732.1-201ENST00000612648 864 ntBASIC19.22■□□□□ 0.67
VPS33AQ96AX1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS33AQ96AX1 TMEM179-206ENST00000616017 1645 ntBASIC19.22■□□□□ 0.67
VPS33AQ96AX1 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS33AQ96AX1 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS33AQ96AX1 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms