Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 AC068880.1-201ENST00000507289 2297 ntBASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 AC046158.3-201ENST00000624947 2558 ntBASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 AF131216.4-201ENST00000638924 1588 ntBASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 MIR4508-201ENST00000584178 70 ntBASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28AQ8IWP9 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC28AQ8IWP9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 TCF3P1-201ENST00000423021 1937 ntBASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 KRT8P33-201ENST00000508125 1423 ntBASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 PVT1_1.1-201ENST00000615125 194 ntBASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 AC008894.3-201ENST00000624324 3103 ntBASIC16.72■□□□□ 0.27
CCDC28AQ8IWP9 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CCDC28AQ8IWP9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms