Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
RNF43Q68DV7 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RNF43Q68DV7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.02■□□□□ 0.96
RNF43Q68DV7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF43Q68DV7 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.02■□□□□ 0.96
RNF43Q68DV7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF43Q68DV7 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF43Q68DV7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RNF43Q68DV7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF43Q68DV7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
RNF43Q68DV7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
RNF43Q68DV7 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.02■□□□□ 0.96
RNF43Q68DV7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.02■□□□□ 0.96
RNF43Q68DV7 AP005212.1-201ENST00000581547 1997 ntBASIC21.02■□□□□ 0.96
RNF43Q68DV7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
RNF43Q68DV7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF43Q68DV7 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
RNF43Q68DV7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RNF43Q68DV7 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
RNF43Q68DV7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.01■□□□□ 0.95
RNF43Q68DV7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.01■□□□□ 0.95
RNF43Q68DV7 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF43Q68DV7 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF43Q68DV7 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.01■□□□□ 0.95
RNF43Q68DV7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.01■□□□□ 0.95
RNF43Q68DV7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.01■□□□□ 0.95
RNF43Q68DV7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF43Q68DV7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RNF43Q68DV7 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RNF43Q68DV7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21■□□□□ 0.95
RNF43Q68DV7 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21■□□□□ 0.95
RNF43Q68DV7 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
RNF43Q68DV7 HLA-B-256ENST00000639848 1089 ntBASIC21■□□□□ 0.95
RNF43Q68DV7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21■□□□□ 0.95
RNF43Q68DV7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21■□□□□ 0.95
RNF43Q68DV7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RNF43Q68DV7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF43Q68DV7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
RNF43Q68DV7 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.99■□□□□ 0.95
RNF43Q68DV7 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF43Q68DV7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.99■□□□□ 0.95
RNF43Q68DV7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF43Q68DV7 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.99■□□□□ 0.95
RNF43Q68DV7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF43Q68DV7 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.99■□□□□ 0.95
RNF43Q68DV7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RNF43Q68DV7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF43Q68DV7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF43Q68DV7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RNF43Q68DV7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF43Q68DV7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.97■□□□□ 0.95
RNF43Q68DV7 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
RNF43Q68DV7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.97■□□□□ 0.95
RNF43Q68DV7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RNF43Q68DV7 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF43Q68DV7 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF43Q68DV7 AC008550.1-201ENST00000511500 884 ntBASIC20.97■□□□□ 0.95
RNF43Q68DV7 UNC93B5-201ENST00000530315 699 ntBASIC20.97■□□□□ 0.95
RNF43Q68DV7 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
RNF43Q68DV7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
RNF43Q68DV7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.97■□□□□ 0.95
RNF43Q68DV7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF43Q68DV7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF43Q68DV7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms