Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNFT1Q5M7Z0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNFT1Q5M7Z0 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 ECEL1P3-201ENST00000427961 737 ntBASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 AP001412.1-201ENST00000608405 714 ntBASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 REXO1L12P-201ENST00000622156 912 ntBASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 NBPF21P-201ENST00000425093 1451 ntBASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 AC005229.4-201ENST00000610085 2198 ntBASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNFT1Q5M7Z0 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 AC006128.1-201ENST00000624704 1661 ntBASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 KRT17P2-201ENST00000300992 1314 ntBASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 AC211429.1-201ENST00000415277 523 ntBASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 BX088651.1-201ENST00000540551 451 ntBASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 AC079834.2-201ENST00000609776 1949 ntBASIC18.1■□□□□ 0.49
RNFT1Q5M7Z0 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 HLA-G-202ENST00000376815 851 ntBASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 HLA-G-203ENST00000376818 1127 ntBASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNFT1Q5M7Z0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms