Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL28A1Q2UY09 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
COL28A1Q2UY09 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL28A1Q2UY09 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL28A1Q2UY09 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL28A1Q2UY09 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL28A1Q2UY09 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.27■□□□□ 0.67
COL28A1Q2UY09 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.26■□□□□ 0.67
COL28A1Q2UY09 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 AL137013.1-201ENST00000432946 1228 ntBASIC19.26■□□□□ 0.67
COL28A1Q2UY09 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL28A1Q2UY09 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 KRT8P9-201ENST00000558927 1449 ntBASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 RNF165-205ENST00000588679 2904 ntBASIC19.25■□□□□ 0.67
COL28A1Q2UY09 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 AC073130.3-201ENST00000624389 2278 ntBASIC19.25■□□□□ 0.67
COL28A1Q2UY09 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 TERF1P1-201ENST00000311003 1181 ntBASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 UPK3BP1-201ENST00000428678 509 ntBASIC19.25■□□□□ 0.67
COL28A1Q2UY09 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 AC120498.8-201ENST00000614275 531 ntBASIC19.25■□□□□ 0.67
COL28A1Q2UY09 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL28A1Q2UY09 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL28A1Q2UY09 LINC01568-207ENST00000641790 1380 ntBASIC19.24■□□□□ 0.67
COL28A1Q2UY09 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms