Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.62■□□□□ 0.41
CX3CR1P49238 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CX3CR1P49238 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.62■□□□□ 0.41
CX3CR1P49238 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.62■□□□□ 0.41
CX3CR1P49238 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.62■□□□□ 0.41
CX3CR1P49238 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CX3CR1P49238 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CX3CR1P49238 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CX3CR1P49238 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CX3CR1P49238 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CX3CR1P49238 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.62■□□□□ 0.41
CX3CR1P49238 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CX3CR1P49238 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CX3CR1P49238 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CX3CR1P49238 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.62■□□□□ 0.41
CX3CR1P49238 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CX3CR1P49238 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CX3CR1P49238 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CX3CR1P49238 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.62■□□□□ 0.41
CX3CR1P49238 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CX3CR1P49238 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CX3CR1P49238 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.61■□□□□ 0.41
CX3CR1P49238 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CX3CR1P49238 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.61■□□□□ 0.41
CX3CR1P49238 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.61■□□□□ 0.41
CX3CR1P49238 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.61■□□□□ 0.41
CX3CR1P49238 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.61■□□□□ 0.41
CX3CR1P49238 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CX3CR1P49238 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
CX3CR1P49238 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CX3CR1P49238 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.61■□□□□ 0.41
CX3CR1P49238 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CX3CR1P49238 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.61■□□□□ 0.41
CX3CR1P49238 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.61■□□□□ 0.41
CX3CR1P49238 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.61■□□□□ 0.41
CX3CR1P49238 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.61■□□□□ 0.41
CX3CR1P49238 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CX3CR1P49238 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CX3CR1P49238 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.6■□□□□ 0.41
CX3CR1P49238 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CX3CR1P49238 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.6■□□□□ 0.41
CX3CR1P49238 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CX3CR1P49238 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.6■□□□□ 0.41
CX3CR1P49238 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CX3CR1P49238 DUX4L16-201ENST00000555130 1264 ntBASIC17.6■□□□□ 0.41
CX3CR1P49238 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.6■□□□□ 0.41
CX3CR1P49238 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.6■□□□□ 0.41
CX3CR1P49238 MIR5787-201ENST00000611784 55 ntBASIC17.6■□□□□ 0.41
CX3CR1P49238 AC011767.1-201ENST00000617410 1153 ntBASIC17.6■□□□□ 0.41
CX3CR1P49238 ANKRD20A6P-201ENST00000618763 204 ntBASIC17.6■□□□□ 0.41
CX3CR1P49238 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CX3CR1P49238 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CX3CR1P49238 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CX3CR1P49238 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CX3CR1P49238 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CX3CR1P49238 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CX3CR1P49238 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
CX3CR1P49238 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.6■□□□□ 0.41
CX3CR1P49238 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.6■□□□□ 0.41
CX3CR1P49238 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CX3CR1P49238 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CX3CR1P49238 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.59■□□□□ 0.41
CX3CR1P49238 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CX3CR1P49238 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.59■□□□□ 0.41
CX3CR1P49238 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.59■□□□□ 0.41
CX3CR1P49238 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.59■□□□□ 0.41
CX3CR1P49238 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CX3CR1P49238 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
CX3CR1P49238 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.59■□□□□ 0.41
CX3CR1P49238 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.59■□□□□ 0.41
CX3CR1P49238 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CX3CR1P49238 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CX3CR1P49238 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CX3CR1P49238 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CX3CR1P49238 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CX3CR1P49238 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.59■□□□□ 0.41
CX3CR1P49238 AC006015.1-201ENST00000429970 570 ntBASIC17.59■□□□□ 0.41
CX3CR1P49238 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CX3CR1P49238 CNN2P6-201ENST00000439038 900 ntBASIC17.59■□□□□ 0.41
CX3CR1P49238 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.59■□□□□ 0.41
CX3CR1P49238 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CX3CR1P49238 RARRES2P4-201ENST00000514074 484 ntBASIC17.59■□□□□ 0.41
CX3CR1P49238 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.59■□□□□ 0.41
CX3CR1P49238 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.59■□□□□ 0.41
CX3CR1P49238 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CX3CR1P49238 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CX3CR1P49238 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CX3CR1P49238 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CX3CR1P49238 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.59■□□□□ 0.41
CX3CR1P49238 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CX3CR1P49238 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
CX3CR1P49238 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.58■□□□□ 0.41
CX3CR1P49238 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.58■□□□□ 0.41
CX3CR1P49238 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CX3CR1P49238 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CX3CR1P49238 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.58■□□□□ 0.41
CX3CR1P49238 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CX3CR1P49238 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CX3CR1P49238 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CX3CR1P49238 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms