Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 TERF1P5-201ENST00000477545 1207 ntBASIC16.3■□□□□ 0.2
CDX1P47902 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.3■□□□□ 0.2
CDX1P47902 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.3■□□□□ 0.2
CDX1P47902 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 AC020916.1-201ENST00000587762 1774 ntBASIC16.3■□□□□ 0.2
CDX1P47902 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.3■□□□□ 0.2
CDX1P47902 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDX1P47902 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.29■□□□□ 0.2
CDX1P47902 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.29■□□□□ 0.2
CDX1P47902 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.29■□□□□ 0.2
CDX1P47902 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDX1P47902 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.29■□□□□ 0.2
CDX1P47902 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC16.29■□□□□ 0.2
CDX1P47902 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.29■□□□□ 0.2
CDX1P47902 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.29■□□□□ 0.2
CDX1P47902 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.29■□□□□ 0.2
CDX1P47902 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC16.29■□□□□ 0.2
CDX1P47902 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDX1P47902 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.29■□□□□ 0.2
CDX1P47902 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 AC026471.6-201ENST00000622954 1905 ntBASIC16.29■□□□□ 0.2
CDX1P47902 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDX1P47902 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.28■□□□□ 0.2
CDX1P47902 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.28■□□□□ 0.2
CDX1P47902 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.28■□□□□ 0.2
CDX1P47902 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
CDX1P47902 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.28■□□□□ 0.2
CDX1P47902 AP000974.1-201ENST00000623909 2387 ntBASIC16.28■□□□□ 0.2
CDX1P47902 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 NCF1B-203ENST00000435988 1254 ntBASIC16.28■□□□□ 0.2
CDX1P47902 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC16.28■□□□□ 0.2
CDX1P47902 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.28■□□□□ 0.2
CDX1P47902 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CDX1P47902 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CDX1P47902 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.28■□□□□ 0.2
CDX1P47902 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.28■□□□□ 0.2
CDX1P47902 NEFHP1-201ENST00000412845 2629 ntBASIC16.28■□□□□ 0.2
CDX1P47902 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDX1P47902 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDX1P47902 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.27■□□□□ 0.2
CDX1P47902 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.27■□□□□ 0.2
CDX1P47902 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDX1P47902 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDX1P47902 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.27■□□□□ 0.2
CDX1P47902 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CDX1P47902 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDX1P47902 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDX1P47902 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.27■□□□□ 0.2
CDX1P47902 MIR663A-201ENST00000385250 93 ntBASIC16.27■□□□□ 0.2
CDX1P47902 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC16.27■□□□□ 0.2
CDX1P47902 AC007322.4-201ENST00000509611 723 ntBASIC16.27■□□□□ 0.2
CDX1P47902 AC005181.1-201ENST00000604782 1256 ntBASIC16.27■□□□□ 0.2
CDX1P47902 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.27■□□□□ 0.2
CDX1P47902 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CDX1P47902 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CDX1P47902 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
CDX1P47902 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC16.27■□□□□ 0.19
CDX1P47902 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CDX1P47902 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CDX1P47902 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CDX1P47902 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms