Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA4P43681 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.27■□□□□ 0.84
CHRNA4P43681 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA4P43681 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CHRNA4P43681 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CHRNA4P43681 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CHRNA4P43681 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.27■□□□□ 0.84
CHRNA4P43681 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA4P43681 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CHRNA4P43681 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
CHRNA4P43681 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.27■□□□□ 0.84
CHRNA4P43681 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
CHRNA4P43681 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CHRNA4P43681 AL109923.1-201ENST00000618799 583 ntBASIC20.27■□□□□ 0.84
CHRNA4P43681 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA4P43681 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA4P43681 TCF3P1-201ENST00000423021 1937 ntBASIC20.27■□□□□ 0.84
CHRNA4P43681 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHRNA4P43681 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHRNA4P43681 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CHRNA4P43681 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
CHRNA4P43681 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.26■□□□□ 0.83
CHRNA4P43681 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.26■□□□□ 0.83
CHRNA4P43681 DUSP5P2-201ENST00000426873 1033 ntBASIC20.26■□□□□ 0.83
CHRNA4P43681 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CHRNA4P43681 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.26■□□□□ 0.83
CHRNA4P43681 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA4P43681 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.26■□□□□ 0.83
CHRNA4P43681 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CHRNA4P43681 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CHRNA4P43681 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CHRNA4P43681 BX119927.1-201ENST00000636596 1552 ntBASIC20.25■□□□□ 0.83
CHRNA4P43681 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.25■□□□□ 0.83
CHRNA4P43681 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA4P43681 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA4P43681 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.25■□□□□ 0.83
CHRNA4P43681 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA4P43681 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CHRNA4P43681 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.25■□□□□ 0.83
CHRNA4P43681 AC104771.1-201ENST00000603335 964 ntBASIC20.25■□□□□ 0.83
CHRNA4P43681 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 AC092118.2-201ENST00000613495 667 ntBASIC20.25■□□□□ 0.83
CHRNA4P43681 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA4P43681 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CHRNA4P43681 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.25■□□□□ 0.83
CHRNA4P43681 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA4P43681 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CHRNA4P43681 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.24■□□□□ 0.83
CHRNA4P43681 AL691432.2-201ENST00000607222 2038 ntBASIC20.24■□□□□ 0.83
CHRNA4P43681 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CHRNA4P43681 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.24■□□□□ 0.83
CHRNA4P43681 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CHRNA4P43681 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.24■□□□□ 0.83
CHRNA4P43681 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.24■□□□□ 0.83
CHRNA4P43681 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.24■□□□□ 0.83
CHRNA4P43681 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.24■□□□□ 0.83
CHRNA4P43681 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.24■□□□□ 0.83
CHRNA4P43681 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.24■□□□□ 0.83
CHRNA4P43681 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
CHRNA4P43681 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA4P43681 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA4P43681 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA4P43681 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA4P43681 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA4P43681 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA4P43681 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHRNA4P43681 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms