Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.57■□□□□ 0.4
COL8A1P27658 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.57■□□□□ 0.4
COL8A1P27658 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.57■□□□□ 0.4
COL8A1P27658 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC17.57■□□□□ 0.4
COL8A1P27658 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.56■□□□□ 0.4
COL8A1P27658 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
COL8A1P27658 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.56■□□□□ 0.4
COL8A1P27658 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
COL8A1P27658 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.56■□□□□ 0.4
COL8A1P27658 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.56■□□□□ 0.4
COL8A1P27658 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.56■□□□□ 0.4
COL8A1P27658 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.56■□□□□ 0.4
COL8A1P27658 AC004264.1-201ENST00000608354 794 ntBASIC17.56■□□□□ 0.4
COL8A1P27658 AL356652.1-201ENST00000615962 565 ntBASIC17.56■□□□□ 0.4
COL8A1P27658 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.56■□□□□ 0.4
COL8A1P27658 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.56■□□□□ 0.4
COL8A1P27658 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.56■□□□□ 0.4
COL8A1P27658 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.56■□□□□ 0.4
COL8A1P27658 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL8A1P27658 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.55■□□□□ 0.4
COL8A1P27658 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.55■□□□□ 0.4
COL8A1P27658 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 C9orf163-202ENST00000624034 2573 ntBASIC17.55■□□□□ 0.4
COL8A1P27658 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.55■□□□□ 0.4
COL8A1P27658 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.55■□□□□ 0.4
COL8A1P27658 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.55■□□□□ 0.4
COL8A1P27658 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.55■□□□□ 0.4
COL8A1P27658 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.55■□□□□ 0.4
COL8A1P27658 LINC01238-205ENST00000567549 1107 ntBASIC17.55■□□□□ 0.4
COL8A1P27658 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.55■□□□□ 0.4
COL8A1P27658 AP000550.4-202ENST00000639755 178 ntBASIC17.55■□□□□ 0.4
COL8A1P27658 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
COL8A1P27658 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL8A1P27658 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.54■□□□□ 0.4
COL8A1P27658 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.54■□□□□ 0.4
COL8A1P27658 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.54■□□□□ 0.4
COL8A1P27658 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.54■□□□□ 0.4
COL8A1P27658 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.54■□□□□ 0.4
COL8A1P27658 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.54■□□□□ 0.4
COL8A1P27658 AC117947.1-201ENST00000427448 529 ntBASIC17.54■□□□□ 0.4
COL8A1P27658 BX664615.1-201ENST00000443558 458 ntBASIC17.54■□□□□ 0.4
COL8A1P27658 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 CLDN5-201ENST00000403084 2357 ntBASIC17.54■□□□□ 0.4
COL8A1P27658 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
COL8A1P27658 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL8A1P27658 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
COL8A1P27658 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.53■□□□□ 0.4
COL8A1P27658 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
COL8A1P27658 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC17.53■□□□□ 0.4
COL8A1P27658 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.53■□□□□ 0.4
COL8A1P27658 INGX-201ENST00000359239 846 ntBASIC17.53■□□□□ 0.4
COL8A1P27658 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
COL8A1P27658 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms