Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMS4P0CW20 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS4P0CW20 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS4P0CW20 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS4P0CW20 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS4P0CW20 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS4P0CW20 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS4P0CW20 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS4P0CW20 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS4P0CW20 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
LIMS4P0CW20 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIMS4P0CW20 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.83■□□□□ 0.45
LIMS4P0CW20 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMS4P0CW20 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
LIMS4P0CW20 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.83■□□□□ 0.45
LIMS4P0CW20 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIMS4P0CW20 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS4P0CW20 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS4P0CW20 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 AF213884.3-201ENST00000563833 479 ntBASIC17.83■□□□□ 0.44
LIMS4P0CW20 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS4P0CW20 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS4P0CW20 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS4P0CW20 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS4P0CW20 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS4P0CW20 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
LIMS4P0CW20 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 AC096631.2-201ENST00000436136 790 ntBASIC17.82■□□□□ 0.44
LIMS4P0CW20 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS4P0CW20 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS4P0CW20 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LIMS4P0CW20 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LIMS4P0CW20 AC007322.3-201ENST00000426526 701 ntBASIC17.81■□□□□ 0.44
LIMS4P0CW20 AC091305.1-201ENST00000479476 895 ntBASIC17.81■□□□□ 0.44
LIMS4P0CW20 AL358852.1-201ENST00000623174 1268 ntBASIC17.81■□□□□ 0.44
LIMS4P0CW20 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMS4P0CW20 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
LIMS4P0CW20 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS4P0CW20 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 IRS3P-201ENST00000223076 1006 ntBASIC17.8■□□□□ 0.44
LIMS4P0CW20 DUX4L2-201ENST00000561772 1275 ntBASIC17.8■□□□□ 0.44
LIMS4P0CW20 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 FAM21FP-204ENST00000608637 956 ntBASIC17.8■□□□□ 0.44
LIMS4P0CW20 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 DUX4L6-201ENST00000626483 1275 ntBASIC17.8■□□□□ 0.44
LIMS4P0CW20 DUX4L1-201ENST00000627662 1275 ntBASIC17.8■□□□□ 0.44
LIMS4P0CW20 DUX4L8-201ENST00000629013 1275 ntBASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms