Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
LIMS3P0CW19 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIMS3P0CW19 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.83■□□□□ 0.45
LIMS3P0CW19 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMS3P0CW19 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
LIMS3P0CW19 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.83■□□□□ 0.45
LIMS3P0CW19 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIMS3P0CW19 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS3P0CW19 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS3P0CW19 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 AF213884.3-201ENST00000563833 479 ntBASIC17.83■□□□□ 0.44
LIMS3P0CW19 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS3P0CW19 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS3P0CW19 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS3P0CW19 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS3P0CW19 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMS3P0CW19 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
LIMS3P0CW19 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 AC096631.2-201ENST00000436136 790 ntBASIC17.82■□□□□ 0.44
LIMS3P0CW19 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMS3P0CW19 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMS3P0CW19 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LIMS3P0CW19 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LIMS3P0CW19 AC007322.3-201ENST00000426526 701 ntBASIC17.81■□□□□ 0.44
LIMS3P0CW19 AC091305.1-201ENST00000479476 895 ntBASIC17.81■□□□□ 0.44
LIMS3P0CW19 AL358852.1-201ENST00000623174 1268 ntBASIC17.81■□□□□ 0.44
LIMS3P0CW19 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMS3P0CW19 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
LIMS3P0CW19 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMS3P0CW19 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS3P0CW19 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS3P0CW19 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIMS3P0CW19 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS3P0CW19 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS3P0CW19 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS3P0CW19 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS3P0CW19 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMS3P0CW19 IRS3P-201ENST00000223076 1006 ntBASIC17.8■□□□□ 0.44
LIMS3P0CW19 DUX4L2-201ENST00000561772 1275 ntBASIC17.8■□□□□ 0.44
LIMS3P0CW19 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIMS3P0CW19 FAM21FP-204ENST00000608637 956 ntBASIC17.8■□□□□ 0.44
LIMS3P0CW19 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.8■□□□□ 0.44
LIMS3P0CW19 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.8■□□□□ 0.44
LIMS3P0CW19 DUX4L6-201ENST00000626483 1275 ntBASIC17.8■□□□□ 0.44
LIMS3P0CW19 DUX4L1-201ENST00000627662 1275 ntBASIC17.8■□□□□ 0.44
LIMS3P0CW19 DUX4L8-201ENST00000629013 1275 ntBASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms