Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LDB3O75112 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDB3O75112 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.9■□□□□ 0.62
LDB3O75112 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LDB3O75112 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LDB3O75112 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.9■□□□□ 0.62
LDB3O75112 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
LDB3O75112 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 AL162377.1-201ENST00000618844 1793 ntBASIC18.89■□□□□ 0.61
LDB3O75112 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.89■□□□□ 0.61
LDB3O75112 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.89■□□□□ 0.61
LDB3O75112 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.89■□□□□ 0.61
LDB3O75112 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.89■□□□□ 0.61
LDB3O75112 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.89■□□□□ 0.61
LDB3O75112 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
LDB3O75112 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
LDB3O75112 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.89■□□□□ 0.61
LDB3O75112 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
LDB3O75112 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDB3O75112 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.89■□□□□ 0.61
LDB3O75112 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.88■□□□□ 0.61
LDB3O75112 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LDB3O75112 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.88■□□□□ 0.61
LDB3O75112 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.88■□□□□ 0.61
LDB3O75112 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.88■□□□□ 0.61
LDB3O75112 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
LDB3O75112 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.88■□□□□ 0.61
LDB3O75112 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.88■□□□□ 0.61
LDB3O75112 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.88■□□□□ 0.61
LDB3O75112 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDB3O75112 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
LDB3O75112 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDB3O75112 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDB3O75112 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDB3O75112 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LDB3O75112 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LDB3O75112 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.87■□□□□ 0.61
LDB3O75112 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LDB3O75112 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.87■□□□□ 0.61
LDB3O75112 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LDB3O75112 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.87■□□□□ 0.61
LDB3O75112 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.87■□□□□ 0.61
LDB3O75112 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.87■□□□□ 0.61
LDB3O75112 AC112907.3-201ENST00000577781 2400 ntBASIC18.87■□□□□ 0.61
LDB3O75112 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.87■□□□□ 0.61
LDB3O75112 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.87■□□□□ 0.61
LDB3O75112 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDB3O75112 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDB3O75112 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.86■□□□□ 0.61
LDB3O75112 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
LDB3O75112 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.86■□□□□ 0.61
LDB3O75112 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.86■□□□□ 0.61
LDB3O75112 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDB3O75112 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDB3O75112 AC092368.3-202ENST00000574180 1591 ntBASIC18.86■□□□□ 0.61
LDB3O75112 PCDHAC2-203ENST00000615316 3011 ntBASIC18.86■□□□□ 0.61
LDB3O75112 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.86■□□□□ 0.61
LDB3O75112 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
LDB3O75112 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LDB3O75112 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.86■□□□□ 0.61
LDB3O75112 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDB3O75112 RNA5SP413-201ENST00000516373 109 ntBASIC18.86■□□□□ 0.61
LDB3O75112 KRT18P6-201ENST00000555540 1265 ntBASIC18.86■□□□□ 0.61
LDB3O75112 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LDB3O75112 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.86■□□□□ 0.61
LDB3O75112 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.86■□□□□ 0.61
LDB3O75112 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.86■□□□□ 0.61
LDB3O75112 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.86■□□□□ 0.61
LDB3O75112 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDB3O75112 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDB3O75112 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDB3O75112 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDB3O75112 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms