Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.21
CCDC88BA6NC98 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
CCDC88BA6NC98 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC35.07■■■■□ 3.2
CCDC88BA6NC98 SLC25A3P1-201ENST00000443844 931 ntBASIC35.07■■■■□ 3.2
CCDC88BA6NC98 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC35.07■■■■□ 3.2
CCDC88BA6NC98 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC35.07■■■■□ 3.2
CCDC88BA6NC98 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 CRAT-202ENST00000393384 973 ntTSL 2 BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
CCDC88BA6NC98 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC35.05■■■■□ 3.2
CCDC88BA6NC98 CR392000.1-201ENST00000624770 1228 ntBASIC35.05■■■■□ 3.2
CCDC88BA6NC98 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC35.05■■■■□ 3.2
CCDC88BA6NC98 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC35.05■■■■□ 3.2
CCDC88BA6NC98 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC35.05■■■■□ 3.2
CCDC88BA6NC98 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC35.05■■■■□ 3.2
CCDC88BA6NC98 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 NME3-204ENST00000563498 920 ntTSL 2 BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
CCDC88BA6NC98 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 MYB-221ENST00000527615 2381 ntTSL 5 BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 NAPSB-206ENST00000562112 1266 ntBASIC35.03■■■■□ 3.2
CCDC88BA6NC98 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 ABBA01031674.1-201ENST00000635145 728 ntBASIC35.03■■■■□ 3.2
CCDC88BA6NC98 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC35.03■■■■□ 3.2
CCDC88BA6NC98 AL121603.2-201ENST00000557373 2117 ntBASIC35.02■■■■□ 3.2
CCDC88BA6NC98 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC35.02■■■■□ 3.2
CCDC88BA6NC98 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC35.02■■■■□ 3.2
CCDC88BA6NC98 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC35.02■■■■□ 3.2
CCDC88BA6NC98 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
CCDC88BA6NC98 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC35.01■■■■□ 3.2
CCDC88BA6NC98 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC35.01■■■■□ 3.2
CCDC88BA6NC98 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
CCDC88BA6NC98 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC35.01■■■■□ 3.2
CCDC88BA6NC98 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 PRR31-201ENST00000371629 978 ntTSL 2 BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC35.01■■■■□ 3.19
CCDC88BA6NC98 KRT8P20-201ENST00000423953 1409 ntBASIC35■■■■□ 3.19
CCDC88BA6NC98 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CCDC88BA6NC98 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC35■■■■□ 3.19
CCDC88BA6NC98 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC35■■■■□ 3.19
CCDC88BA6NC98 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC35■■■■□ 3.19
CCDC88BA6NC98 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CCDC88BA6NC98 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CCDC88BA6NC98 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CCDC88BA6NC98 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CCDC88BA6NC98 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC35■■■■□ 3.19
CCDC88BA6NC98 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 CFL2-205ENST00000555765 632 ntTSL 2 BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 AL590326.2-201ENST00000625139 305 ntBASIC34.99■■■■□ 3.19
CCDC88BA6NC98 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
CCDC88BA6NC98 ARMC10P1-201ENST00000313754 855 ntBASIC34.98■■■■□ 3.19
CCDC88BA6NC98 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC34.98■■■■□ 3.19
CCDC88BA6NC98 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC34.98■■■■□ 3.19
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms