Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 KRASP1-201ENST00000407852 552 ntBASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 PRKY-204ENST00000533551 1019 ntBASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 AC124016.1-201ENST00000609552 612 ntBASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAV40A0A0B4J280 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 AC023632.3-201ENST00000521633 145 ntBASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAV40A0A0B4J280 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 FP700111.2-201ENST00000619190 1892 ntBASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TRAV40A0A0B4J280 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 AL121603.2-201ENST00000557373 2117 ntBASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 AC124283.5-201ENST00000624661 1809 ntBASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRAV40A0A0B4J280 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 AC007375.3-201ENST00000600936 2314 ntBASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 AC026310.3-201ENST00000625186 2373 ntBASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms