Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 APTR-203ENST00000430801 583 ntTSL 5 BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AL591742.1-201ENST00000604433 565 ntBASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AC005181.1-201ENST00000604782 1256 ntBASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AC013268.1-206ENST00000638368 961 ntBASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AC112229.1-201ENST00000639295 961 ntBASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AC008550.1-201ENST00000511500 884 ntBASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 AC007322.1-201ENST00000426983 750 ntBASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 USP36-216ENST00000589424 970 ntTSL 5 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC27■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC27■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC27■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC27■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC27■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC27■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC27■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC26.99■■□□□ 1.91
SENP3-EIF4A1A0A087X0R7 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC26.99■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms