Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 ASNSD1-201ENST00000260952 2450 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 SCMH1-203ENST00000361191 2906 ntTSL 5 BASIC8.25□□□□□ -1.09
MSX1P28360 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 NEDD4L-203ENST00000357895 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 PRDM9-201ENST00000296682 3691 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 CD300LD-201ENST00000375352 1303 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 LINC02418-202ENST00000567788 4592 ntTSL 2 BASIC8.25□□□□□ -1.09
MSX1P28360 AL078595.2-201ENST00000605309 1780 ntBASIC8.25□□□□□ -1.09
MSX1P28360 AMPH-201ENST00000325590 3145 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSX1P28360 AC091152.4-201ENST00000623480 3483 ntBASIC8.24□□□□□ -1.09
MSX1P28360 PNMA8A-202ENST00000438932 3335 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 MERTK-202ENST00000409780 3189 ntAPPRIS ALT2 TSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 LRRC40-201ENST00000370952 2884 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 BPNT1-205ENST00000469520 2737 ntAPPRIS P1 TSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 CHURC1-206ENST00000552002 2566 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 AL117192.1-202ENST00000557689 1990 ntTSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 SH3YL1-205ENST00000403712 1695 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 EEF1A1P7-201ENST00000596811 1394 ntBASIC8.24□□□□□ -1.09
MSX1P28360 IFT122-202ENST00000347300 3841 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 OR4D9-202ENST00000641278 6063 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
MSX1P28360 SIMC1-201ENST00000332772 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 FAM111A-211ENST00000533703 4202 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 AL354740.1-201ENST00000586726 2681 ntTSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 KIAA1328-203ENST00000586501 1577 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 SCGB2A2-201ENST00000227918 505 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 SPRR3-201ENST00000295367 878 ntAPPRIS P2 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 SEZ6L2-201ENST00000308713 3801 ntAPPRIS P4 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 UBE2Q2P1-202ENST00000354771 883 ntBASIC8.24□□□□□ -1.09
MSX1P28360 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 NUPR1-202ENST00000395641 550 ntTSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 NINJ2-202ENST00000397265 793 ntAPPRIS ALT2 TSL 3 BASIC8.24□□□□□ -1.09
MSX1P28360 DEFB108C-201ENST00000400154 252 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AC245452.3-201ENST00000413294 162 ntBASIC8.24□□□□□ -1.09
MSX1P28360 CYCSP5-201ENST00000415043 297 ntBASIC8.24□□□□□ -1.09
MSX1P28360 USP32P1-203ENST00000417524 1014 ntTSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 AC012354.2-201ENST00000423051 461 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC8.24□□□□□ -1.09
MSX1P28360 TRIM26BP-206ENST00000427723 753 ntBASIC8.24□□□□□ -1.09
MSX1P28360 CTBP2P1-201ENST00000431853 245 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AL109810.1-201ENST00000435008 495 ntBASIC8.24□□□□□ -1.09
MSX1P28360 LINC01526-201ENST00000441949 520 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 AL441992.1-201ENST00000443631 544 ntTSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 AC245884.3-201ENST00000445491 218 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 CCRL1P1-201ENST00000449542 1053 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC8.24□□□□□ -1.09
MSX1P28360 MTND3P10-201ENST00000450967 341 ntBASIC8.24□□□□□ -1.09
MSX1P28360 RPS12P20-201ENST00000464109 380 ntBASIC8.24□□□□□ -1.09
MSX1P28360 RPS14P7-201ENST00000473701 448 ntBASIC8.24□□□□□ -1.09
MSX1P28360 RPL23AP44-201ENST00000482216 473 ntBASIC8.24□□□□□ -1.09
MSX1P28360 IGKV1-27-201ENST00000498435 382 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
MSX1P28360 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 HMGB1P3-201ENST00000502802 616 ntBASIC8.24□□□□□ -1.09
MSX1P28360 ARL4AP1-201ENST00000503220 705 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AC025188.1-201ENST00000507514 600 ntTSL 3 BASIC8.24□□□□□ -1.09
MSX1P28360 AC008837.1-201ENST00000511513 412 ntBASIC8.24□□□□□ -1.09
MSX1P28360 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC8.24□□□□□ -1.09
MSX1P28360 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC8.24□□□□□ -1.09
MSX1P28360 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC8.24□□□□□ -1.09
MSX1P28360 C1GALT1P3-201ENST00000522049 819 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AC104417.1-201ENST00000523974 751 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC8.24□□□□□ -1.09
MSX1P28360 OR4A43P-201ENST00000532938 908 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC8.24□□□□□ -1.09
MSX1P28360 AC090115.1-201ENST00000548257 562 ntTSL 4 BASIC8.24□□□□□ -1.09
MSX1P28360 PCBP2-213ENST00000548933 1202 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 CENPUP2-201ENST00000555897 1186 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AL022318.2-201ENST00000558766 258 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AC009021.1-201ENST00000566098 375 ntTSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC8.24□□□□□ -1.09
MSX1P28360 BNIP3P33-201ENST00000598912 569 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AC090181.2-201ENST00000602975 672 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AC008498.1-201ENST00000613012 531 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 AC079602.4-201ENST00000637836 532 ntBASIC8.24□□□□□ -1.09
MSX1P28360 AL139020.1-203ENST00000556386 2738 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 TADA2A-202ENST00000612272 1948 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 NRXN3-215ENST00000557594 3381 ntTSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 ZNF714-201ENST00000425625 2562 ntTSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 VSIG1-202ENST00000415430 3236 ntAPPRIS ALT2 TSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 ARHGEF9-237ENST00000638021 3876 ntTSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 PCLO-209ENST00000618073 1614 ntTSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 AL133230.1-201ENST00000431019 4587 ntTSL 2 BASIC8.24□□□□□ -1.09
MSX1P28360 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSX1P28360 STXBP6-207ENST00000550887 1311 ntAPPRIS P1 TSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 PTPRA-202ENST00000318266 3219 ntAPPRIS P1 TSL 5 BASIC8.24□□□□□ -1.09
MSX1P28360 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 IKZF3-214ENST00000467757 1362 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 SIRPB1-213ENST00000568365 1701 ntAPPRIS ALT2 TSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 AL603750.1-201ENST00000624216 1717 ntBASIC8.23□□□□□ -1.09
MSX1P28360 NVL-202ENST00000340871 2431 ntTSL 2 BASIC8.23□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms