RNA–Protein interactions for RNA: ENST00000502802.1

HMGB1P3-201, Transcript of high mobility group box 1 pseudogene 3, humanhuman

BASIC

Gene HMGB1P3, Length 616 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P3-201ENST00000502802 CHIC1Q5VXU3 224 aa20.93■□□□□ 0.94
HMGB1P3-201ENST00000502802 AEBP2Q6ZN18 517 aaPredicted RBP20.76■□□□□ 0.91
HMGB1P3-201ENST00000502802 PHF23Q9BUL5 403 aaPredicted RBP18.47■□□□□ 0.55
HMGB1P3-201ENST00000502802 SENP3Q9H4L4 574 aaPredicted RBP17.52■□□□□ 0.4
HMGB1P3-201ENST00000502802 PLPPR3Q6T4P5 718 aa17.3■□□□□ 0.36
HMGB1P3-201ENST00000502802 FOXD1Q16676 465 aa16.18■□□□□ 0.18
HMGB1P3-201ENST00000502802 ADRA2BP18089 450 aa16.16■□□□□ 0.18
HMGB1P3-201ENST00000502802 PPP6R1Q9UPN7 881 aa16.08■□□□□ 0.16
HMGB1P3-201ENST00000502802 KCNA4P22459 653 aa15.71■□□□□ 0.11
HMGB1P3-201ENST00000502802 PIAS4Q8N2W9 510 aaPredicted RBP15.42■□□□□ 0.06
HMGB1P3-201ENST00000502802 EHMT2Q96KQ7 1210 aa15.4■□□□□ 0.06
HMGB1P3-201ENST00000502802 PPP4R3CPQ6ZMV5 832 aa15.32■□□□□ 0.04
HMGB1P3-201ENST00000502802 NCBP3Q53F19 620 aaKnown RBP15.12■□□□□ 0.01
HMGB1P3-201ENST00000502802 SLC4A1APQ9BWU0 796 aaKnown RBP15.08■□□□□ 0
HMGB1P3-201ENST00000502802 CSRNP3Q8WYN3 585 aa14.93□□□□□ -0.02
HMGB1P3-201ENST00000502802 NPM3O75607 178 aaKnown RBP14.89□□□□□ -0.03
HMGB1P3-201ENST00000502802 SCAF1Q9H7N4 1312 aaKnown RBP14.76□□□□□ -0.05
HMGB1P3-201ENST00000502802 CNKSR2Q8WXI2 1034 aa14.75□□□□□ -0.05
HMGB1P3-201ENST00000502802 MSH5O43196 834 aa14.67□□□□□ -0.06
HMGB1P3-201ENST00000502802 ZBTB22O15209 634 aa14.45□□□□□ -0.1
HMGB1P3-201ENST00000502802 MAPK8IP2Q13387 824 aaPredicted RBP14.42□□□□□ -0.1
HMGB1P3-201ENST00000502802 DNAJC5BQ9UF47 199 aa14.37□□□□□ -0.11
HMGB1P3-201ENST00000502802 RNF216Q9NWF9 866 aaPredicted RBP14.3□□□□□ -0.12
HMGB1P3-201ENST00000502802 FOXD4L1Q9NU39 408 aa14.27□□□□□ -0.13
HMGB1P3-201ENST00000502802 DMRT2Q9Y5R5 561 aa14.09□□□□□ -0.15
HMGB1P3-201ENST00000502802 HOXD11P31277 338 aaPredicted RBP14.06□□□□□ -0.16
HMGB1P3-201ENST00000502802 SLC4A2P04920 1241 aa13.89□□□□□ -0.19
HMGB1P3-201ENST00000502802 MYCNP04198 464 aaPredicted RBP13.75□□□□□ -0.21
HMGB1P3-201ENST00000502802 ATXN8OSP0DMR3 200 aa13.73□□□□□ -0.21
HMGB1P3-201ENST00000502802 FKBP8Q14318 412 aa13.46□□□□□ -0.25
HMGB1P3-201ENST00000502802 DCAF8L1A6NGE4 600 aa13.44□□□□□ -0.26
HMGB1P3-201ENST00000502802 AMER1Q5JTC6 1135 aaPredicted RBP13.43□□□□□ -0.26
HMGB1P3-201ENST00000502802 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.26
HMGB1P3-201ENST00000502802 RTN4Q9NQC3 1192 aaKnown RBP13.4□□□□□ -0.26
HMGB1P3-201ENST00000502802 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.33□□□□□ -0.28
HMGB1P3-201ENST00000502802 HNRNPUL2Q1KMD3 747 aaKnown RBP13.33□□□□□ -0.28
HMGB1P3-201ENST00000502802 ATF5Q9Y2D1 282 aaPredicted RBP13.33□□□□□ -0.28
HMGB1P3-201ENST00000502802 SAMD1Q6SPF0 538 aaPredicted RBP13.31□□□□□ -0.28
HMGB1P3-201ENST00000502802 U3KPZ7 1027 aaPredicted RBP13.25□□□□□ -0.29
HMGB1P3-201ENST00000502802 SLC24A1O60721 1099 aa13.18□□□□□ -0.3
HMGB1P3-201ENST00000502802 ZNF219Q9P2Y4 722 aaPredicted RBP13.05□□□□□ -0.32
HMGB1P3-201ENST00000502802 APLP2Q06481 763 aa13.04□□□□□ -0.32
HMGB1P3-201ENST00000502802 SPDYE4A6NLX3 237 aa12.82□□□□□ -0.36
HMGB1P3-201ENST00000502802 FBXO3Q9UK99 471 aa12.82□□□□□ -0.36
HMGB1P3-201ENST00000502802 MKRN4PQ13434 485 aaPredicted RBP12.78□□□□□ -0.36
HMGB1P3-201ENST00000502802 FBLN2P98095 1184 aa12.73□□□□□ -0.37
HMGB1P3-201ENST00000502802 TRHP20396 242 aaPredicted RBP12.71□□□□□ -0.37
HMGB1P3-201ENST00000502802 PROM2Q8N271 834 aa12.7□□□□□ -0.38
HMGB1P3-201ENST00000502802 SPINK5Q9NQ38 1064 aaPredicted RBP12.68□□□□□ -0.38
HMGB1P3-201ENST00000502802 POLA2Q14181 598 aa12.66□□□□□ -0.38
HMGB1P3-201ENST00000502802 RNF39Q9H2S5 420 aa12.62□□□□□ -0.39
HMGB1P3-201ENST00000502802 CAPN15O75808 1086 aa12.61□□□□□ -0.39
HMGB1P3-201ENST00000502802 VASPP50552 380 aaPredicted RBP12.6□□□□□ -0.39
HMGB1P3-201ENST00000502802 C1QBPQ07021 282 aaKnown RBP12.52□□□□□ -0.41
HMGB1P3-201ENST00000502802 ZBTB12Q9Y330 459 aaPredicted RBP12.5□□□□□ -0.41
HMGB1P3-201ENST00000502802 IFNLR1Q8IU57 520 aaPredicted RBP12.49□□□□□ -0.41
HMGB1P3-201ENST00000502802 ABCB7O75027 752 aa12.42□□□□□ -0.42
HMGB1P3-201ENST00000502802 PLCB2Q00722 1185 aa12.38□□□□□ -0.43
HMGB1P3-201ENST00000502802 DCAF8L2P0C7V8 631 aa12.32□□□□□ -0.44
HMGB1P3-201ENST00000502802 PKD2Q13563 968 aa12.32□□□□□ -0.44
HMGB1P3-201ENST00000502802 ZNF692Q9BU19 519 aaPredicted RBP12.28□□□□□ -0.44
HMGB1P3-201ENST00000502802 DSG3P32926 999 aa12.25□□□□□ -0.45
HMGB1P3-201ENST00000502802 KLHL34Q8N239 644 aa12.25□□□□□ -0.45
HMGB1P3-201ENST00000502802 SPOCK2Q92563 424 aa12.24□□□□□ -0.45
HMGB1P3-201ENST00000502802 STAG3Q9UJ98 1225 aa12.24□□□□□ -0.45
HMGB1P3-201ENST00000502802 SPDYE2BA6NHP3 402 aa12.21□□□□□ -0.45
HMGB1P3-201ENST00000502802 SPDYE6P0CI01 402 aa12.21□□□□□ -0.45
HMGB1P3-201ENST00000502802 HAP1P54257 671 aaPredicted RBP12.21□□□□□ -0.45
HMGB1P3-201ENST00000502802 SPDYE2Q495Y8 402 aa12.21□□□□□ -0.45
HMGB1P3-201ENST00000502802 POTEDQ86YR6 584 aa12.19□□□□□ -0.46
HMGB1P3-201ENST00000502802 OSCARQ8IYS5 282 aa12.19□□□□□ -0.46
HMGB1P3-201ENST00000502802 SSUH2Q9Y2M2 353 aa12.19□□□□□ -0.46
HMGB1P3-201ENST00000502802 PLCD3Q8N3E9 789 aa12.14□□□□□ -0.47
HMGB1P3-201ENST00000502802 ECM2O94769 699 aaPredicted RBP12.13□□□□□ -0.47
HMGB1P3-201ENST00000502802 PABPN1Q86U42 306 aaKnown RBP eCLIP12.13□□□□□ -0.47
HMGB1P3-201ENST00000502802 MIER1Q8N108 512 aa12.09□□□□□ -0.47
HMGB1P3-201ENST00000502802 BBXQ8WY36 941 aaPredicted RBP12.07□□□□□ -0.48
HMGB1P3-201ENST00000502802 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.06□□□□□ -0.48
HMGB1P3-201ENST00000502802 VSIG10Q8N0Z9 540 aa12.05□□□□□ -0.48
HMGB1P3-201ENST00000502802 NPM1P06748 294 aaKnown RBP eCLIP12□□□□□ -0.49
HMGB1P3-201ENST00000502802 RGL2O15211 777 aa11.99□□□□□ -0.49
HMGB1P3-201ENST00000502802 PLEKHG5O94827 1062 aa11.99□□□□□ -0.49
HMGB1P3-201ENST00000502802 ZBTB47Q9UFB7 747 aaPredicted RBP11.98□□□□□ -0.49
HMGB1P3-201ENST00000502802 BCANQ96GW7 911 aa11.97□□□□□ -0.49
HMGB1P3-201ENST00000502802 PAXIP1Q6ZW49 1069 aaPredicted RBP11.95□□□□□ -0.5
HMGB1P3-201ENST00000502802 CFAP44Q96MT7 982 aa11.93□□□□□ -0.5
HMGB1P3-201ENST00000502802 CIZ1Q9ULV3 898 aaPredicted RBP11.93□□□□□ -0.5
HMGB1P3-201ENST00000502802 SPRYD3Q8NCJ5 442 aa11.87□□□□□ -0.51
HMGB1P3-201ENST00000502802 TRIM41Q8WV44 630 aa11.86□□□□□ -0.51
HMGB1P3-201ENST00000502802 KDM2AQ9Y2K7 1162 aa11.86□□□□□ -0.51
HMGB1P3-201ENST00000502802 CHGAP10645 457 aaKnown RBP11.83□□□□□ -0.52
HMGB1P3-201ENST00000502802 CACNB1Q02641 598 aaPredicted RBP11.82□□□□□ -0.52
HMGB1P3-201ENST00000502802 GSE1Q14687 1217 aa11.77□□□□□ -0.53
HMGB1P3-201ENST00000502802 TAOK2Q9UL54 1235 aa11.77□□□□□ -0.53
HMGB1P3-201ENST00000502802 TSHZ2Q9NRE2 1034 aa11.75□□□□□ -0.53
HMGB1P3-201ENST00000502802 PRKCSHP14314 528 aaPredicted RBP11.73□□□□□ -0.53
HMGB1P3-201ENST00000502802 HS6ST3Q8IZP7 471 aa11.72□□□□□ -0.53
HMGB1P3-201ENST00000502802 NUBP1P53384 320 aa11.71□□□□□ -0.53
HMGB1P3-201ENST00000502802 SPDYE1Q8NFV5 336 aaPredicted RBP11.7□□□□□ -0.54
HMGB1P3-201ENST00000502802 RNF25Q96BH1 459 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms