Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 GTF2IP1-202ENST00000614592 2047 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 SELENOP-203ENST00000506577 2204 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 CCL13-201ENST00000225844 851 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 FABP9-201ENST00000379071 497 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 C1QTNF9B-203ENST00000382145 888 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 TRBV6-6-201ENST00000390371 388 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 RNF11P2-201ENST00000427702 440 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC123904.1-201ENST00000441072 368 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC092570.2-201ENST00000452117 1143 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 TCEAL4P1-201ENST00000453620 588 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AL390026.1-201ENST00000456647 457 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 OR7E62P-201ENST00000456741 477 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 RN7SL282P-201ENST00000479676 297 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 CC2D2A-207ENST00000507954 548 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 LINC01184-206ENST00000508878 968 ntTSL 5 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 FLJ46284-202ENST00000521148 496 ntTSL 3 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 SNX18P27-201ENST00000523611 779 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 OR7E96P-201ENST00000530816 976 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 HIGD1AP9-201ENST00000550710 279 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 TRIM69-210ENST00000561043 1017 ntTSL 3 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC133569.1-201ENST00000564327 373 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 STX8-209ENST00000574431 731 ntTSL 3 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC005518.2-201ENST00000603254 282 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 MIR6726-201ENST00000613751 61 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AL391903.2-201ENST00000614532 247 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC006449.1-201ENST00000616263 571 ntTSL 4 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 BX005195.1-201ENST00000618097 1198 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC073488.8-201ENST00000631952 757 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 PRPS1L1-202ENST00000638645 957 ntAPPRIS P2 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC119674.1-209ENST00000642031 997 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 IL12B-201ENST00000231228 2761 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 SF3A3P1-201ENST00000446317 1477 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 NKRF-201ENST00000304449 3269 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 PTPN14-205ENST00000543945 3842 ntTSL 5 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC087045.3-201ENST00000623046 2468 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 UBR4-201ENST00000375218 4031 ntTSL 2 BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AL353795.1-201ENST00000439134 1775 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 AC009948.3-201ENST00000603415 1798 ntBASIC7.03□□□□□ -1.28
C9orf40Q8IXQ3 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.28
C9orf40Q8IXQ3 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC7.02□□□□□ -1.28
C9orf40Q8IXQ3 ITPK1-AS1-201ENST00000553639 4701 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 KCNK2-203ENST00000444842 3379 ntAPPRIS ALT1 TSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 LINC00208-201ENST00000304233 2150 ntTSL 2 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 LRP12-201ENST00000276654 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 PTPRT-211ENST00000618610 3230 ntTSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 TTC3P1-201ENST00000399586 6081 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 MITF-203ENST00000328528 4680 ntTSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 NUS1P4-201ENST00000401550 585 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 RN7SKP39-201ENST00000410773 322 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AC243547.1-201ENST00000415065 408 ntTSL 2 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 SNX18P3-201ENST00000424993 835 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 OR5M13P-201ENST00000433944 937 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AC108039.2-201ENST00000440214 359 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AC074286.1-202ENST00000441205 567 ntTSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 LINC00954-202ENST00000449086 2995 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 RN7SL308P-201ENST00000464971 297 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 RPL34P22-201ENST00000468193 318 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 LINC00992-201ENST00000504107 617 ntTSL 2 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AP004833.1-201ENST00000507987 1238 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 FXYD5-207ENST00000541435 898 ntAPPRIS P2 TSL 2 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 VDAC2P2-201ENST00000544463 901 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 SUPT16H-204ENST00000555943 915 ntTSL 2 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AL118558.1-201ENST00000557551 566 ntTSL 3 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AC012291.1-201ENST00000559666 429 ntTSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AL137802.2-201ENST00000562878 1110 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 LINC01572-204ENST00000570035 831 ntTSL 3 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 MRPL45P2-203ENST00000573318 473 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AC005323.1-203ENST00000585303 566 ntTSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 OR7E94P-202ENST00000601375 790 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AC023310.4-201ENST00000613130 650 ntBASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 AL354733.2-202ENST00000615485 742 ntTSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 EFHC1-233ENST00000637353 3829 ntTSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 NACA-216ENST00000550952 2922 ntTSL 2 BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 TMEM209-206ENST00000473456 1961 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
C9orf40Q8IXQ3 FCGR3A-201ENST00000367967 2086 ntAPPRIS P1 TSL 3 BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms