Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 AC068338.2-201ENST00000563278 1430 ntBASIC20.73■□□□□ 0.91
USP29Q9HBJ7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 AC105036.2-201ENST00000569468 176 ntBASIC20.73■□□□□ 0.91
USP29Q9HBJ7 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 AL138781.1-201ENST00000566567 1274 ntBASIC20.72■□□□□ 0.91
USP29Q9HBJ7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP29Q9HBJ7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
USP29Q9HBJ7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.71■□□□□ 0.91
USP29Q9HBJ7 RARRES2P4-201ENST00000514074 484 ntBASIC20.71■□□□□ 0.91
USP29Q9HBJ7 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
USP29Q9HBJ7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.71■□□□□ 0.91
USP29Q9HBJ7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
USP29Q9HBJ7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP29Q9HBJ7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
USP29Q9HBJ7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 PGM5P4-201ENST00000421970 445 ntBASIC20.7■□□□□ 0.9
USP29Q9HBJ7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.7■□□□□ 0.9
USP29Q9HBJ7 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 TSPY20P-201ENST00000450910 630 ntBASIC20.69■□□□□ 0.9
USP29Q9HBJ7 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 MIR4758-201ENST00000577688 71 ntBASIC20.69■□□□□ 0.9
USP29Q9HBJ7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP29Q9HBJ7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 AC100791.3-201ENST00000617619 330 ntBASIC20.68■□□□□ 0.9
USP29Q9HBJ7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms