Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PIF1Q9H611 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PIF1Q9H611 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PIF1Q9H611 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PIF1Q9H611 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.15■□□□□ 0.66
PIF1Q9H611 AC027612.3-201ENST00000413684 1047 ntBASIC19.15■□□□□ 0.66
PIF1Q9H611 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PIF1Q9H611 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.15■□□□□ 0.66
PIF1Q9H611 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.15■□□□□ 0.66
PIF1Q9H611 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PIF1Q9H611 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
PIF1Q9H611 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.15■□□□□ 0.66
PIF1Q9H611 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PIF1Q9H611 AC020763.4-201ENST00000623414 4170 ntBASIC19.15■□□□□ 0.66
PIF1Q9H611 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PIF1Q9H611 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PIF1Q9H611 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.14■□□□□ 0.66
PIF1Q9H611 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PIF1Q9H611 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.66
PIF1Q9H611 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PIF1Q9H611 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
PIF1Q9H611 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 AL691432.2-201ENST00000607222 2038 ntBASIC19.14■□□□□ 0.65
PIF1Q9H611 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.14■□□□□ 0.65
PIF1Q9H611 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.14■□□□□ 0.65
PIF1Q9H611 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 AC019069.1-201ENST00000610008 1333 ntBASIC19.14■□□□□ 0.65
PIF1Q9H611 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.14■□□□□ 0.65
PIF1Q9H611 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
PIF1Q9H611 DPP3P2-201ENST00000416030 1696 ntBASIC19.14■□□□□ 0.65
PIF1Q9H611 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.14■□□□□ 0.65
PIF1Q9H611 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PIF1Q9H611 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PIF1Q9H611 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.13■□□□□ 0.65
PIF1Q9H611 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
PIF1Q9H611 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
PIF1Q9H611 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
PIF1Q9H611 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.13■□□□□ 0.65
PIF1Q9H611 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.13■□□□□ 0.65
PIF1Q9H611 SLC7A5P2-201ENST00000553010 536 ntBASIC19.13■□□□□ 0.65
PIF1Q9H611 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 KRT16P2-201ENST00000414673 1423 ntBASIC19.13■□□□□ 0.65
PIF1Q9H611 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.13■□□□□ 0.65
PIF1Q9H611 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.13■□□□□ 0.65
PIF1Q9H611 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
PIF1Q9H611 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PIF1Q9H611 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
PIF1Q9H611 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
PIF1Q9H611 AC018445.3-201ENST00000624177 1945 ntBASIC19.12■□□□□ 0.65
PIF1Q9H611 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.12■□□□□ 0.65
PIF1Q9H611 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.12■□□□□ 0.65
PIF1Q9H611 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.12■□□□□ 0.65
PIF1Q9H611 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.12■□□□□ 0.65
PIF1Q9H611 ZNRF2P3-201ENST00000424200 374 ntBASIC19.12■□□□□ 0.65
PIF1Q9H611 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 AC138907.5-202ENST00000569484 235 ntBASIC19.12■□□□□ 0.65
PIF1Q9H611 AC120498.10-201ENST00000621827 505 ntBASIC19.12■□□□□ 0.65
PIF1Q9H611 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.12■□□□□ 0.65
PIF1Q9H611 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.12■□□□□ 0.65
PIF1Q9H611 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PIF1Q9H611 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
PIF1Q9H611 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PIF1Q9H611 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PIF1Q9H611 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
PIF1Q9H611 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PIF1Q9H611 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms