Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TIMP4Q99727 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TIMP4Q99727 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TIMP4Q99727 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.46■□□□□ 0.55
TIMP4Q99727 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TIMP4Q99727 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TIMP4Q99727 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
TIMP4Q99727 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TIMP4Q99727 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.46■□□□□ 0.55
TIMP4Q99727 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TIMP4Q99727 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.46■□□□□ 0.55
TIMP4Q99727 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.46■□□□□ 0.55
TIMP4Q99727 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.54
TIMP4Q99727 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.54
TIMP4Q99727 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TIMP4Q99727 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.45■□□□□ 0.54
TIMP4Q99727 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TIMP4Q99727 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TIMP4Q99727 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TIMP4Q99727 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TIMP4Q99727 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TIMP4Q99727 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TIMP4Q99727 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.45■□□□□ 0.54
TIMP4Q99727 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TIMP4Q99727 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.45■□□□□ 0.54
TIMP4Q99727 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TIMP4Q99727 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.45■□□□□ 0.54
TIMP4Q99727 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TIMP4Q99727 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.45■□□□□ 0.54
TIMP4Q99727 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TIMP4Q99727 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
TIMP4Q99727 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TIMP4Q99727 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.45■□□□□ 0.54
TIMP4Q99727 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.44■□□□□ 0.54
TIMP4Q99727 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
TIMP4Q99727 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.44■□□□□ 0.54
TIMP4Q99727 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.44■□□□□ 0.54
TIMP4Q99727 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TIMP4Q99727 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.44■□□□□ 0.54
TIMP4Q99727 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
TIMP4Q99727 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TIMP4Q99727 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.44■□□□□ 0.54
TIMP4Q99727 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.44■□□□□ 0.54
TIMP4Q99727 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
TIMP4Q99727 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TIMP4Q99727 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.43■□□□□ 0.54
TIMP4Q99727 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TIMP4Q99727 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.43■□□□□ 0.54
TIMP4Q99727 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TIMP4Q99727 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TIMP4Q99727 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.43■□□□□ 0.54
TIMP4Q99727 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.43■□□□□ 0.54
TIMP4Q99727 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.43■□□□□ 0.54
TIMP4Q99727 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TIMP4Q99727 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
TIMP4Q99727 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.43■□□□□ 0.54
TIMP4Q99727 AC105020.6-201ENST00000621523 1217 ntBASIC18.43■□□□□ 0.54
TIMP4Q99727 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TIMP4Q99727 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TIMP4Q99727 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TIMP4Q99727 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.43■□□□□ 0.54
TIMP4Q99727 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
TIMP4Q99727 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TIMP4Q99727 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.42■□□□□ 0.54
TIMP4Q99727 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.42■□□□□ 0.54
TIMP4Q99727 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TIMP4Q99727 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.42■□□□□ 0.54
TIMP4Q99727 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.42■□□□□ 0.54
TIMP4Q99727 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.42■□□□□ 0.54
TIMP4Q99727 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.42■□□□□ 0.54
TIMP4Q99727 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.42■□□□□ 0.54
TIMP4Q99727 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.42■□□□□ 0.54
TIMP4Q99727 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.42■□□□□ 0.54
TIMP4Q99727 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TIMP4Q99727 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms