Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 EGLN1P1-201ENST00000531623 762 ntBASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC13.68□□□□□ -0.22
ALMS1Q8TCU4 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 FAM99A-202ENST00000538190 1989 ntBASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 HMGA1P5-201ENST00000412453 271 ntBASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 FSCN1P1-201ENST00000568912 1481 ntBASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 AC080038.3-201ENST00000623346 1952 ntBASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 AC091390.4-202ENST00000476426 537 ntBASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC13.67□□□□□ -0.22
ALMS1Q8TCU4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 AC008040.2-201ENST00000461049 708 ntBASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 YBX1P2-201ENST00000489612 999 ntBASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 AC005332.1-201ENST00000577698 1310 ntBASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ALMS1Q8TCU4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 KRT18P16-201ENST00000510337 1294 ntBASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 LIN28AP1-201ENST00000429574 405 ntBASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ALMS1Q8TCU4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
ALMS1Q8TCU4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms